Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2156 and Dsui_2157 are separated by 580 nucleotides Dsui_2157 and Dsui_2158 overlap by 20 nucleotides Dsui_2158 and Dsui_2159 are separated by 237 nucleotides
Dsui_2156: Dsui_2156 - methyl-accepting chemotaxis protein, at 2,286,025 to 2,287,665
_2156
Dsui_2157: Dsui_2157 - PAS domain S-box, at 2,288,246 to 2,290,624
_2157
Dsui_2158: Dsui_2158 - response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 2,290,605 to 2,291,252
_2158
Dsui_2159: Dsui_2159 - methyl-accepting chemotaxis protein, at 2,291,490 to 2,292,758
_2159
Position (kb)
2288
2289
2290
2291 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2287.450 kb on - strand, within Dsui_2156 at 2287.507 kb on - strand at 2287.567 kb on + strand at 2287.590 kb on + strand at 2287.597 kb on + strand at 2287.605 kb on - strand at 2287.605 kb on - strand at 2287.614 kb on + strand at 2287.717 kb on + strand at 2287.748 kb on - strand at 2287.748 kb on - strand at 2287.922 kb on + strand at 2287.922 kb on + strand at 2287.939 kb on + strand at 2287.974 kb on + strand at 2287.974 kb on + strand at 2288.003 kb on + strand at 2288.003 kb on + strand at 2288.011 kb on - strand at 2288.086 kb on - strand at 2288.287 kb on + strand at 2288.363 kb on - strand at 2288.368 kb on - strand at 2288.426 kb on + strand at 2288.764 kb on + strand, within Dsui_2157 at 2288.823 kb on + strand, within Dsui_2157 at 2288.873 kb on - strand at 2288.874 kb on + strand at 2288.962 kb on - strand at 2289.113 kb on + strand, within Dsui_2157 at 2289.133 kb on + strand, within Dsui_2157 at 2289.222 kb on - strand, within Dsui_2157 at 2289.504 kb on - strand at 2289.809 kb on + strand, within Dsui_2157 at 2289.939 kb on + strand, within Dsui_2157 at 2289.979 kb on + strand, within Dsui_2157 at 2290.039 kb on - strand at 2290.072 kb on - strand, within Dsui_2157 at 2290.397 kb on + strand at 2290.582 kb on + strand at 2290.587 kb on + strand at 2290.587 kb on + strand at 2290.653 kb on + strand at 2290.697 kb on + strand, within Dsui_2158 at 2290.761 kb on + strand, within Dsui_2158 at 2290.770 kb on - strand at 2291.110 kb on + strand at 2291.332 kb on - strand at 2291.434 kb on + strand at 2291.613 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 2,287,450 - Dsui_2156 0.87 +0.8 2,287,507 - +1.1 2,287,567 + +1.0 2,287,590 + +1.0 2,287,597 + +1.0 2,287,605 - +0.6 2,287,605 - +0.2 2,287,614 + +0.0 2,287,717 + +1.0 2,287,748 - +0.8 2,287,748 - -0.1 2,287,922 + +0.6 2,287,922 + +0.3 2,287,939 + -2.0 2,287,974 + +0.4 2,287,974 + +0.8 2,288,003 + +0.0 2,288,003 + -0.1 2,288,011 - +1.0 2,288,086 - -1.0 2,288,287 + +0.1 2,288,363 - +1.1 2,288,368 - -0.5 2,288,426 + -1.7 2,288,764 + Dsui_2157 0.22 -0.5 2,288,823 + Dsui_2157 0.24 +1.1 2,288,873 - +1.1 2,288,874 + +1.1 2,288,962 - +1.1 2,289,113 + Dsui_2157 0.36 -2.8 2,289,133 + Dsui_2157 0.37 +0.1 2,289,222 - Dsui_2157 0.41 +1.1 2,289,504 - +1.1 2,289,809 + Dsui_2157 0.66 +1.1 2,289,939 + Dsui_2157 0.71 +0.1 2,289,979 + Dsui_2157 0.73 +0.1 2,290,039 - +1.1 2,290,072 - Dsui_2157 0.77 +1.1 2,290,397 + -0.5 2,290,582 + +1.0 2,290,587 + +1.0 2,290,587 + +0.3 2,290,653 + +0.0 2,290,697 + Dsui_2158 0.14 +0.0 2,290,761 + Dsui_2158 0.24 +0.0 2,290,770 - +0.0 2,291,110 + +0.0 2,291,332 - -2.1 2,291,434 + -0.5 2,291,613 + +0.1
Or see this region's nucleotide sequence