Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2044 and Dsui_2045 are separated by 150 nucleotides Dsui_2045 and Dsui_2046 are separated by 40 nucleotides Dsui_2046 and Dsui_2047 are separated by 168 nucleotides
Dsui_2044: Dsui_2044 - Rhodanese-related sulfurtransferase, at 2,163,887 to 2,164,660
_2044
Dsui_2045: Dsui_2045 - hypothetical protein, at 2,164,811 to 2,165,128
_2045
Dsui_2046: Dsui_2046 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,165,169 to 2,166,848
_2046
Dsui_2047: Dsui_2047 - chromate transporter, chromate ion transporter family, at 2,167,017 to 2,168,399
_2047
Position (kb)
2165
2166
2167 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2164.174 kb on + strand, within Dsui_2044 at 2164.259 kb on - strand at 2164.409 kb on + strand, within Dsui_2044 at 2164.761 kb on + strand at 2164.791 kb on + strand at 2164.796 kb on + strand at 2164.796 kb on + strand at 2164.796 kb on + strand at 2164.796 kb on + strand at 2164.796 kb on + strand at 2164.804 kb on - strand at 2164.869 kb on + strand at 2164.893 kb on - strand at 2164.950 kb on + strand, within Dsui_2045 at 2165.021 kb on + strand, within Dsui_2045 at 2165.047 kb on - strand, within Dsui_2045 at 2165.066 kb on + strand, within Dsui_2045 at 2165.076 kb on + strand, within Dsui_2045 at 2165.265 kb on + strand at 2165.317 kb on + strand at 2165.382 kb on + strand, within Dsui_2046 at 2165.590 kb on + strand at 2165.638 kb on - strand at 2165.640 kb on + strand at 2165.648 kb on - strand at 2165.666 kb on + strand, within Dsui_2046 at 2165.805 kb on - strand, within Dsui_2046 at 2165.831 kb on + strand, within Dsui_2046 at 2165.870 kb on + strand at 2166.141 kb on - strand, within Dsui_2046 at 2166.174 kb on + strand, within Dsui_2046 at 2166.192 kb on + strand, within Dsui_2046 at 2166.361 kb on + strand at 2166.454 kb on + strand at 2166.505 kb on - strand, within Dsui_2046 at 2166.505 kb on - strand, within Dsui_2046 at 2166.535 kb on + strand at 2166.570 kb on + strand, within Dsui_2046 at 2166.573 kb on - strand, within Dsui_2046 at 2166.751 kb on - strand at 2166.786 kb on - strand at 2166.786 kb on - strand at 2167.001 kb on + strand at 2167.021 kb on - strand at 2167.222 kb on + strand, within Dsui_2047 at 2167.302 kb on - strand at 2167.369 kb on + strand at 2167.377 kb on - strand at 2167.412 kb on + strand, within Dsui_2047 at 2167.471 kb on + strand, within Dsui_2047 at 2167.471 kb on + strand at 2167.479 kb on - strand at 2167.570 kb on + strand, within Dsui_2047 at 2167.736 kb on + strand, within Dsui_2047
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 2,164,174 + Dsui_2044 0.37 +2.1 2,164,259 - +1.1 2,164,409 + Dsui_2044 0.67 -2.1 2,164,761 + +1.1 2,164,791 + -1.5 2,164,796 + +0.1 2,164,796 + -0.5 2,164,796 + +0.1 2,164,796 + +0.1 2,164,796 + +0.1 2,164,804 - +1.1 2,164,869 + +1.1 2,164,893 - +1.1 2,164,950 + Dsui_2045 0.44 -0.5 2,165,021 + Dsui_2045 0.66 +0.1 2,165,047 - Dsui_2045 0.74 +1.1 2,165,066 + Dsui_2045 0.80 -0.5 2,165,076 + Dsui_2045 0.83 -0.9 2,165,265 + +1.1 2,165,317 + +0.1 2,165,382 + Dsui_2046 0.13 +0.1 2,165,590 + +2.1 2,165,638 - +0.1 2,165,640 + +0.1 2,165,648 - -0.5 2,165,666 + Dsui_2046 0.30 -0.5 2,165,805 - Dsui_2046 0.38 +1.1 2,165,831 + Dsui_2046 0.39 -0.9 2,165,870 + +0.1 2,166,141 - Dsui_2046 0.58 -1.2 2,166,174 + Dsui_2046 0.60 -0.9 2,166,192 + Dsui_2046 0.61 -0.9 2,166,361 + +1.1 2,166,454 + +1.1 2,166,505 - Dsui_2046 0.80 -0.5 2,166,505 - Dsui_2046 0.80 +0.1 2,166,535 + +1.1 2,166,570 + Dsui_2046 0.83 +1.1 2,166,573 - Dsui_2046 0.84 -0.5 2,166,751 - +1.1 2,166,786 - -0.5 2,166,786 - -0.9 2,167,001 + +2.1 2,167,021 - +1.1 2,167,222 + Dsui_2047 0.15 +0.1 2,167,302 - +0.1 2,167,369 + +1.1 2,167,377 - +1.1 2,167,412 + Dsui_2047 0.29 +1.1 2,167,471 + Dsui_2047 0.33 +1.1 2,167,471 + +0.1 2,167,479 - -0.9 2,167,570 + Dsui_2047 0.40 +1.1 2,167,736 + Dsui_2047 0.52 +1.1
Or see this region's nucleotide sequence