Strain Fitness in Dechlorosoma suillum PS around Dsui_1972

Experiment: ALP with Fusidic 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1971 and Dsui_1972 are separated by 52 nucleotidesDsui_1972 and Dsui_1973 overlap by 4 nucleotides Dsui_1971: Dsui_1971 - RNA polymerase sigma factor RpoS, at 2,078,792 to 2,079,778 _1971 Dsui_1972: Dsui_1972 - lytic murein transglycosylase B, at 2,079,831 to 2,080,862 _1972 Dsui_1973: Dsui_1973 - transglutaminase-like enzyme, predicted cysteine protease, at 2,080,859 to 2,082,865 _1973 Position (kb) 2079 2080 2081Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2078.869 kb on - strandat 2078.869 kb on - strandat 2078.872 kb on + strandat 2079.030 kb on - strand, within Dsui_1971at 2079.035 kb on - strand, within Dsui_1971at 2079.069 kb on + strand, within Dsui_1971at 2079.077 kb on - strand, within Dsui_1971at 2079.085 kb on + strand, within Dsui_1971at 2079.097 kb on + strand, within Dsui_1971at 2079.147 kb on + strand, within Dsui_1971at 2079.148 kb on + strand, within Dsui_1971at 2079.155 kb on - strandat 2079.185 kb on + strand, within Dsui_1971at 2079.209 kb on - strand, within Dsui_1971at 2079.227 kb on + strand, within Dsui_1971at 2079.345 kb on + strand, within Dsui_1971at 2079.353 kb on - strand, within Dsui_1971at 2079.377 kb on + strand, within Dsui_1971at 2079.415 kb on - strand, within Dsui_1971at 2079.458 kb on - strand, within Dsui_1971at 2079.480 kb on + strand, within Dsui_1971at 2079.488 kb on + strand, within Dsui_1971at 2079.496 kb on - strand, within Dsui_1971at 2079.574 kb on - strand, within Dsui_1971at 2079.584 kb on - strand, within Dsui_1971at 2079.635 kb on - strand, within Dsui_1971at 2079.703 kb on + strandat 2079.709 kb on + strandat 2079.725 kb on - strandat 2079.813 kb on + strandat 2079.935 kb on + strandat 2080.081 kb on + strandat 2080.086 kb on + strandat 2080.094 kb on - strand, within Dsui_1972at 2080.108 kb on + strand, within Dsui_1972at 2080.155 kb on + strand, within Dsui_1972at 2080.201 kb on - strand, within Dsui_1972at 2080.277 kb on - strand, within Dsui_1972at 2080.280 kb on - strand, within Dsui_1972at 2080.319 kb on - strand, within Dsui_1972at 2080.319 kb on - strand, within Dsui_1972at 2080.366 kb on + strand, within Dsui_1972at 2080.510 kb on + strandat 2080.713 kb on + strand, within Dsui_1972at 2080.952 kb on + strandat 2080.960 kb on - strandat 2080.978 kb on - strandat 2080.980 kb on + strandat 2080.993 kb on - strandat 2081.065 kb on + strandat 2081.148 kb on - strand, within Dsui_1973at 2081.161 kb on + strandat 2081.343 kb on + strand, within Dsui_1973at 2081.362 kb on + strand, within Dsui_1973at 2081.371 kb on - strand, within Dsui_1973at 2081.371 kb on - strandat 2081.694 kb on - strand, within Dsui_1973at 2081.694 kb on - strand, within Dsui_1973at 2081.701 kb on - strand, within Dsui_1973at 2081.859 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml
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2,078,869 - -1.1
2,078,869 - +1.2
2,078,872 + +0.4
2,079,030 - Dsui_1971 0.24 +0.2
2,079,035 - Dsui_1971 0.25 +0.1
2,079,069 + Dsui_1971 0.28 +0.6
2,079,077 - Dsui_1971 0.29 +1.2
2,079,085 + Dsui_1971 0.30 +0.8
2,079,097 + Dsui_1971 0.31 +0.4
2,079,147 + Dsui_1971 0.36 +1.3
2,079,148 + Dsui_1971 0.36 +0.0
2,079,155 - +2.8
2,079,185 + Dsui_1971 0.40 +0.3
2,079,209 - Dsui_1971 0.42 +1.2
2,079,227 + Dsui_1971 0.44 +0.2
2,079,345 + Dsui_1971 0.56 +1.0
2,079,353 - Dsui_1971 0.57 +0.2
2,079,377 + Dsui_1971 0.59 +0.3
2,079,415 - Dsui_1971 0.63 -1.8
2,079,458 - Dsui_1971 0.67 +2.2
2,079,480 + Dsui_1971 0.70 +0.1
2,079,488 + Dsui_1971 0.71 +0.4
2,079,496 - Dsui_1971 0.71 -0.1
2,079,574 - Dsui_1971 0.79 -0.2
2,079,584 - Dsui_1971 0.80 -1.4
2,079,635 - Dsui_1971 0.85 -0.8
2,079,703 + +1.1
2,079,709 + +0.4
2,079,725 - +0.8
2,079,813 + +0.2
2,079,935 + +1.2
2,080,081 + -0.4
2,080,086 + +1.2
2,080,094 - Dsui_1972 0.25 +2.2
2,080,108 + Dsui_1972 0.27 +1.2
2,080,155 + Dsui_1972 0.31 -1.6
2,080,201 - Dsui_1972 0.36 +0.4
2,080,277 - Dsui_1972 0.43 +0.4
2,080,280 - Dsui_1972 0.44 +1.3
2,080,319 - Dsui_1972 0.47 -0.3
2,080,319 - Dsui_1972 0.47 +0.4
2,080,366 + Dsui_1972 0.52 -0.8
2,080,510 + +1.2
2,080,713 + Dsui_1972 0.85 +0.2
2,080,952 + -0.4
2,080,960 - -1.4
2,080,978 - -0.4
2,080,980 + +1.2
2,080,993 - -1.1
2,081,065 + +1.2
2,081,148 - Dsui_1973 0.14 -0.4
2,081,161 + +0.2
2,081,343 + Dsui_1973 0.24 -0.8
2,081,362 + Dsui_1973 0.25 -1.8
2,081,371 - Dsui_1973 0.26 -1.1
2,081,371 - -0.4
2,081,694 - Dsui_1973 0.42 +0.5
2,081,694 - Dsui_1973 0.42 +0.6
2,081,701 - Dsui_1973 0.42 -0.4
2,081,859 + +1.2

Or see this region's nucleotide sequence