Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1919 and Dsui_1920 overlap by 17 nucleotides Dsui_1920 and Dsui_1921 overlap by 23 nucleotides Dsui_1921 and Dsui_1922 are separated by 14 nucleotides
Dsui_1919: Dsui_1919 - Mg chelatase, cobalamin biosynthesis protein CobN, at 2,022,224 to 2,026,201
_1919
Dsui_1920: Dsui_1920 - hypothetical protein, at 2,026,185 to 2,026,526
_1920
Dsui_1921: Dsui_1921 - biopolymer transport protein, at 2,026,504 to 2,027,112
_1921
Dsui_1922: Dsui_1922 - outer membrane receptor for ferrienterochelin and colicins, at 2,027,127 to 2,029,406
_1922
Position (kb)
2026
2027
2028 Strain fitness (log2 ratio)
-1
0
1 at 2025.598 kb on + strand, within Dsui_1919 at 2025.622 kb on + strand at 2025.657 kb on + strand at 2025.699 kb on + strand, within Dsui_1919 at 2025.800 kb on + strand, within Dsui_1919 at 2025.945 kb on - strand at 2026.054 kb on + strand at 2026.074 kb on + strand at 2026.106 kb on - strand at 2026.366 kb on + strand, within Dsui_1920 at 2026.366 kb on + strand, within Dsui_1920 at 2026.393 kb on + strand, within Dsui_1920 at 2026.503 kb on + strand at 2026.553 kb on - strand at 2026.800 kb on - strand, within Dsui_1921 at 2027.255 kb on + strand at 2027.353 kb on + strand at 2027.424 kb on + strand, within Dsui_1922 at 2027.432 kb on - strand at 2027.518 kb on - strand, within Dsui_1922 at 2027.518 kb on - strand, within Dsui_1922 at 2027.646 kb on - strand, within Dsui_1922 at 2027.677 kb on + strand, within Dsui_1922 at 2027.691 kb on + strand, within Dsui_1922 at 2027.699 kb on - strand, within Dsui_1922 at 2027.714 kb on + strand at 2027.722 kb on + strand, within Dsui_1922 at 2027.798 kb on - strand, within Dsui_1922 at 2027.829 kb on + strand at 2027.844 kb on - strand, within Dsui_1922 at 2027.890 kb on - strand, within Dsui_1922 at 2027.936 kb on - strand at 2028.010 kb on - strand, within Dsui_1922 at 2028.102 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 2,025,598 + Dsui_1919 0.85 +1.1 2,025,622 + +0.1 2,025,657 + +1.1 2,025,699 + Dsui_1919 0.87 -0.5 2,025,800 + Dsui_1919 0.90 +1.1 2,025,945 - +1.1 2,026,054 + +0.1 2,026,074 + +1.1 2,026,106 - -0.5 2,026,366 + Dsui_1920 0.53 +1.1 2,026,366 + Dsui_1920 0.53 +1.1 2,026,393 + Dsui_1920 0.61 +0.1 2,026,503 + +0.5 2,026,553 - +1.1 2,026,800 - Dsui_1921 0.49 +0.1 2,027,255 + +0.7 2,027,353 + +0.1 2,027,424 + Dsui_1922 0.13 -1.7 2,027,432 - -0.5 2,027,518 - Dsui_1922 0.17 +1.1 2,027,518 - Dsui_1922 0.17 +1.1 2,027,646 - Dsui_1922 0.23 +0.1 2,027,677 + Dsui_1922 0.24 +1.1 2,027,691 + Dsui_1922 0.25 -0.5 2,027,699 - Dsui_1922 0.25 -0.5 2,027,714 + +1.1 2,027,722 + Dsui_1922 0.26 +0.1 2,027,798 - Dsui_1922 0.29 -0.5 2,027,829 + +1.1 2,027,844 - Dsui_1922 0.31 +1.1 2,027,890 - Dsui_1922 0.33 -0.5 2,027,936 - -0.9 2,028,010 - Dsui_1922 0.39 +1.1 2,028,102 - +1.1
Or see this region's nucleotide sequence