Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1863 and Dsui_1864 are separated by 41 nucleotides Dsui_1864 and Dsui_1865 are separated by 5 nucleotides
Dsui_1863: Dsui_1863 - response regulator containing a CheY-like receiver domain and an HD-GYP domain, at 1,956,766 to 1,957,806
_1863
Dsui_1864: Dsui_1864 - hypothetical protein, at 1,957,848 to 1,959,011
_1864
Dsui_1865: Dsui_1865 - PAS domain S-box, at 1,959,017 to 1,962,097
_1865
Position (kb)
1957
1958
1959
1960 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1956.880 kb on + strand, within Dsui_1863 at 1956.958 kb on - strand at 1957.026 kb on + strand, within Dsui_1863 at 1957.057 kb on - strand at 1957.280 kb on + strand, within Dsui_1863 at 1957.280 kb on + strand, within Dsui_1863 at 1957.424 kb on - strand at 1957.424 kb on - strand at 1957.476 kb on + strand, within Dsui_1863 at 1957.671 kb on + strand, within Dsui_1863 at 1957.671 kb on + strand at 1957.801 kb on + strand at 1957.857 kb on + strand at 1957.890 kb on + strand at 1957.903 kb on - strand at 1958.000 kb on - strand, within Dsui_1864 at 1958.133 kb on + strand, within Dsui_1864 at 1958.174 kb on + strand, within Dsui_1864 at 1958.277 kb on + strand, within Dsui_1864 at 1958.357 kb on + strand at 1958.369 kb on + strand, within Dsui_1864 at 1958.412 kb on - strand at 1958.450 kb on - strand at 1958.511 kb on + strand, within Dsui_1864 at 1958.519 kb on - strand at 1958.616 kb on + strand, within Dsui_1864 at 1958.649 kb on + strand, within Dsui_1864 at 1958.667 kb on - strand at 1958.696 kb on + strand, within Dsui_1864 at 1958.704 kb on - strand at 1958.881 kb on + strand, within Dsui_1864 at 1959.231 kb on + strand at 1959.391 kb on - strand at 1959.395 kb on - strand, within Dsui_1865 at 1959.590 kb on + strand, within Dsui_1865 at 1959.598 kb on - strand, within Dsui_1865 at 1959.631 kb on + strand, within Dsui_1865 at 1959.884 kb on + strand, within Dsui_1865 at 1959.891 kb on + strand, within Dsui_1865 at 1959.891 kb on + strand, within Dsui_1865 at 1959.899 kb on - strand at 1959.905 kb on - strand at 1959.920 kb on + strand, within Dsui_1865
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 1,956,880 + Dsui_1863 0.11 +1.9 1,956,958 - +0.9 1,957,026 + Dsui_1863 0.25 +0.5 1,957,057 - -0.7 1,957,280 + Dsui_1863 0.49 +0.9 1,957,280 + Dsui_1863 0.49 -0.1 1,957,424 - +0.9 1,957,424 - +0.9 1,957,476 + Dsui_1863 0.68 -0.7 1,957,671 + Dsui_1863 0.87 -2.5 1,957,671 + +0.9 1,957,801 + -1.1 1,957,857 + -0.7 1,957,890 + -0.1 1,957,903 - -0.7 1,958,000 - Dsui_1864 0.13 -1.5 1,958,133 + Dsui_1864 0.24 +2.7 1,958,174 + Dsui_1864 0.28 -1.1 1,958,277 + Dsui_1864 0.37 -1.0 1,958,357 + +0.9 1,958,369 + Dsui_1864 0.45 +0.9 1,958,412 - -0.1 1,958,450 - -0.1 1,958,511 + Dsui_1864 0.57 -0.1 1,958,519 - -0.7 1,958,616 + Dsui_1864 0.66 -0.7 1,958,649 + Dsui_1864 0.69 -0.7 1,958,667 - +0.9 1,958,696 + Dsui_1864 0.73 -0.1 1,958,704 - +0.9 1,958,881 + Dsui_1864 0.89 -0.1 1,959,231 + -0.1 1,959,391 - -0.1 1,959,395 - Dsui_1865 0.12 -1.4 1,959,590 + Dsui_1865 0.19 -0.1 1,959,598 - Dsui_1865 0.19 -2.3 1,959,631 + Dsui_1865 0.20 +0.9 1,959,884 + Dsui_1865 0.28 +0.9 1,959,891 + Dsui_1865 0.28 -0.1 1,959,891 + Dsui_1865 0.28 -1.4 1,959,899 - +0.9 1,959,905 - +0.9 1,959,920 + Dsui_1865 0.29 -0.1
Or see this region's nucleotide sequence