Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1843 and Dsui_1844 are separated by 61 nucleotides Dsui_1844 and Dsui_1845 are separated by 11 nucleotides Dsui_1845 and Dsui_1846 are separated by 101 nucleotides
Dsui_1843: Dsui_1843 - hypothetical protein, at 1,939,174 to 1,939,590
_1843
Dsui_1844: Dsui_1844 - phosphate transport regulator related to PhoU, at 1,939,652 to 1,940,305
_1844
Dsui_1845: Dsui_1845 - phosphate/sulfate permease, at 1,940,317 to 1,941,360
_1845
Dsui_1846: Dsui_1846 - outer membrane phospholipase A, at 1,941,462 to 1,942,622
_1846
Position (kb)
1940
1941
1942 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1939.330 kb on + strand, within Dsui_1843 at 1939.330 kb on + strand, within Dsui_1843 at 1939.525 kb on + strand, within Dsui_1843 at 1939.625 kb on - strand at 1939.639 kb on + strand at 1939.731 kb on - strand, within Dsui_1844 at 1939.770 kb on + strand, within Dsui_1844 at 1939.778 kb on - strand at 1939.817 kb on + strand, within Dsui_1844 at 1939.997 kb on + strand, within Dsui_1844 at 1940.005 kb on - strand, within Dsui_1844 at 1940.034 kb on + strand, within Dsui_1844 at 1940.068 kb on + strand at 1940.068 kb on + strand, within Dsui_1844 at 1940.076 kb on - strand, within Dsui_1844 at 1940.315 kb on + strand at 1940.348 kb on + strand at 1940.353 kb on + strand at 1940.378 kb on - strand at 1940.394 kb on + strand at 1940.485 kb on - strand, within Dsui_1845 at 1940.664 kb on - strand at 1940.718 kb on + strand at 1940.718 kb on + strand at 1940.897 kb on - strand, within Dsui_1845 at 1940.962 kb on + strand, within Dsui_1845 at 1941.061 kb on + strand at 1941.069 kb on - strand, within Dsui_1845 at 1941.096 kb on - strand, within Dsui_1845 at 1941.189 kb on - strand, within Dsui_1845 at 1941.573 kb on - strand at 1941.606 kb on - strand, within Dsui_1846 at 1941.717 kb on - strand, within Dsui_1846 at 1941.735 kb on - strand, within Dsui_1846 at 1941.769 kb on - strand, within Dsui_1846 at 1941.781 kb on - strand, within Dsui_1846 at 1941.886 kb on + strand at 1941.955 kb on - strand, within Dsui_1846 at 1942.021 kb on - strand, within Dsui_1846 at 1942.044 kb on + strand, within Dsui_1846 at 1942.052 kb on - strand, within Dsui_1846 at 1942.053 kb on - strand, within Dsui_1846 at 1942.131 kb on + strand, within Dsui_1846 at 1942.162 kb on - strand, within Dsui_1846 at 1942.309 kb on - strand, within Dsui_1846 at 1942.336 kb on + strand, within Dsui_1846
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 1,939,330 + Dsui_1843 0.37 +0.8 1,939,330 + Dsui_1843 0.37 +0.8 1,939,525 + Dsui_1843 0.84 -1.2 1,939,625 - -1.6 1,939,639 + +0.8 1,939,731 - Dsui_1844 0.12 -0.2 1,939,770 + Dsui_1844 0.18 +0.8 1,939,778 - +0.8 1,939,817 + Dsui_1844 0.25 +0.8 1,939,997 + Dsui_1844 0.53 +0.8 1,940,005 - Dsui_1844 0.54 -1.5 1,940,034 + Dsui_1844 0.58 +0.8 1,940,068 + -0.2 1,940,068 + Dsui_1844 0.64 +0.8 1,940,076 - Dsui_1844 0.65 +0.8 1,940,315 + -2.0 1,940,348 + -1.2 1,940,353 + -0.8 1,940,378 - +0.8 1,940,394 + -0.8 1,940,485 - Dsui_1845 0.16 -0.2 1,940,664 - +0.8 1,940,718 + +0.8 1,940,718 + +0.8 1,940,897 - Dsui_1845 0.56 -1.5 1,940,962 + Dsui_1845 0.62 -0.2 1,941,061 + +0.8 1,941,069 - Dsui_1845 0.72 +0.8 1,941,096 - Dsui_1845 0.75 +0.8 1,941,189 - Dsui_1845 0.84 -1.8 1,941,573 - +0.1 1,941,606 - Dsui_1846 0.12 -2.1 1,941,717 - Dsui_1846 0.22 -4.0 1,941,735 - Dsui_1846 0.24 -1.0 1,941,769 - Dsui_1846 0.26 -2.9 1,941,781 - Dsui_1846 0.27 -1.5 1,941,886 + +0.8 1,941,955 - Dsui_1846 0.42 -1.5 1,942,021 - Dsui_1846 0.48 +1.3 1,942,044 + Dsui_1846 0.50 -1.5 1,942,052 - Dsui_1846 0.51 -2.2 1,942,053 - Dsui_1846 0.51 +0.8 1,942,131 + Dsui_1846 0.58 -1.2 1,942,162 - Dsui_1846 0.60 -1.8 1,942,309 - Dsui_1846 0.73 +0.8 1,942,336 + Dsui_1846 0.75 -0.2
Or see this region's nucleotide sequence