Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1841 and Dsui_1842 are separated by 10 nucleotides Dsui_1842 and Dsui_1843 are separated by 579 nucleotides Dsui_1843 and Dsui_1844 are separated by 61 nucleotides Dsui_1844 and Dsui_1845 are separated by 11 nucleotides
Dsui_1841: Dsui_1841 - hypothetical protein, at 1,937,979 to 1,938,401
_1841
Dsui_1842: Dsui_1842 - hypothetical protein, at 1,938,412 to 1,938,594
_1842
Dsui_1843: Dsui_1843 - hypothetical protein, at 1,939,174 to 1,939,590
_1843
Dsui_1844: Dsui_1844 - phosphate transport regulator related to PhoU, at 1,939,652 to 1,940,305
_1844
Dsui_1845: Dsui_1845 - phosphate/sulfate permease, at 1,940,317 to 1,941,360
_1845
Position (kb)
1939
1940 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1938.277 kb on - strand, within Dsui_1841 at 1938.324 kb on - strand at 1938.334 kb on - strand, within Dsui_1841 at 1938.352 kb on + strand, within Dsui_1841 at 1938.560 kb on - strand, within Dsui_1842 at 1938.577 kb on + strand at 1938.580 kb on - strand at 1938.601 kb on + strand at 1938.601 kb on + strand at 1938.601 kb on + strand at 1938.609 kb on - strand at 1938.762 kb on + strand at 1938.825 kb on + strand at 1938.827 kb on - strand at 1938.893 kb on + strand at 1938.917 kb on + strand at 1938.917 kb on + strand at 1938.934 kb on + strand at 1938.934 kb on + strand at 1938.942 kb on - strand at 1938.942 kb on - strand at 1938.942 kb on - strand at 1938.995 kb on + strand at 1938.995 kb on + strand at 1939.003 kb on - strand at 1939.217 kb on + strand, within Dsui_1843 at 1939.222 kb on + strand, within Dsui_1843 at 1939.222 kb on + strand, within Dsui_1843 at 1939.222 kb on + strand, within Dsui_1843 at 1939.222 kb on + strand, within Dsui_1843 at 1939.229 kb on + strand, within Dsui_1843 at 1939.230 kb on - strand, within Dsui_1843 at 1939.230 kb on - strand, within Dsui_1843 at 1939.230 kb on - strand, within Dsui_1843 at 1939.311 kb on - strand, within Dsui_1843 at 1939.330 kb on + strand, within Dsui_1843 at 1939.330 kb on + strand, within Dsui_1843 at 1939.525 kb on + strand, within Dsui_1843 at 1939.625 kb on - strand at 1939.639 kb on + strand at 1939.731 kb on - strand, within Dsui_1844 at 1939.770 kb on + strand, within Dsui_1844 at 1939.778 kb on - strand at 1939.817 kb on + strand, within Dsui_1844 at 1939.997 kb on + strand, within Dsui_1844 at 1940.005 kb on - strand, within Dsui_1844 at 1940.034 kb on + strand, within Dsui_1844 at 1940.068 kb on + strand at 1940.068 kb on + strand, within Dsui_1844 at 1940.076 kb on - strand, within Dsui_1844 at 1940.315 kb on + strand at 1940.348 kb on + strand at 1940.353 kb on + strand at 1940.378 kb on - strand at 1940.394 kb on + strand at 1940.485 kb on - strand, within Dsui_1845
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 1,938,277 - Dsui_1841 0.70 -0.2 1,938,324 - -0.2 1,938,334 - Dsui_1841 0.84 +0.8 1,938,352 + Dsui_1841 0.88 +0.8 1,938,560 - Dsui_1842 0.81 -0.8 1,938,577 + +0.8 1,938,580 - +0.8 1,938,601 + -0.8 1,938,601 + -0.2 1,938,601 + +0.8 1,938,609 - +0.8 1,938,762 + -0.2 1,938,825 + -1.8 1,938,827 - +0.8 1,938,893 + +0.2 1,938,917 + -0.5 1,938,917 + -0.2 1,938,934 + -0.2 1,938,934 + +0.6 1,938,942 - -0.2 1,938,942 - +1.2 1,938,942 - -1.6 1,938,995 + +0.1 1,938,995 + -0.1 1,939,003 - -1.0 1,939,217 + Dsui_1843 0.10 +0.4 1,939,222 + Dsui_1843 0.12 +1.8 1,939,222 + Dsui_1843 0.12 +0.6 1,939,222 + Dsui_1843 0.12 -1.9 1,939,222 + Dsui_1843 0.12 -2.6 1,939,229 + Dsui_1843 0.13 +2.4 1,939,230 - Dsui_1843 0.13 -1.2 1,939,230 - Dsui_1843 0.13 +0.8 1,939,230 - Dsui_1843 0.13 -0.2 1,939,311 - Dsui_1843 0.33 +0.8 1,939,330 + Dsui_1843 0.37 +0.8 1,939,330 + Dsui_1843 0.37 +0.8 1,939,525 + Dsui_1843 0.84 -1.2 1,939,625 - -1.6 1,939,639 + +0.8 1,939,731 - Dsui_1844 0.12 -0.2 1,939,770 + Dsui_1844 0.18 +0.8 1,939,778 - +0.8 1,939,817 + Dsui_1844 0.25 +0.8 1,939,997 + Dsui_1844 0.53 +0.8 1,940,005 - Dsui_1844 0.54 -1.5 1,940,034 + Dsui_1844 0.58 +0.8 1,940,068 + -0.2 1,940,068 + Dsui_1844 0.64 +0.8 1,940,076 - Dsui_1844 0.65 +0.8 1,940,315 + -2.0 1,940,348 + -1.2 1,940,353 + -0.8 1,940,378 - +0.8 1,940,394 + -0.8 1,940,485 - Dsui_1845 0.16 -0.2
Or see this region's nucleotide sequence