Strain Fitness in Dechlorosoma suillum PS around Dsui_1838

Experiment: ALP with Fusidic 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1836 and Dsui_1837 are separated by 11 nucleotidesDsui_1837 and Dsui_1838 are separated by 1 nucleotidesDsui_1838 and Dsui_1839 are separated by 81 nucleotidesDsui_1839 and Dsui_1840 are separated by 11 nucleotidesDsui_1840 and Dsui_1841 are separated by 66 nucleotides Dsui_1836: Dsui_1836 - response regulator containing a CheY-like receiver domain and an HD-GYP domain, at 1,934,923 to 1,936,125 _1836 Dsui_1837: Dsui_1837 - cation/cationic drug transporter, at 1,936,137 to 1,936,463 _1837 Dsui_1838: Dsui_1838 - spermidine synthase, at 1,936,465 to 1,937,229 _1838 Dsui_1839: Dsui_1839 - hypothetical protein, at 1,937,311 to 1,937,706 _1839 Dsui_1840: Dsui_1840 - hypothetical protein, at 1,937,718 to 1,937,912 _1840 Dsui_1841: Dsui_1841 - hypothetical protein, at 1,937,979 to 1,938,401 _1841 Position (kb) 1936 1937 1938Strain fitness (log2 ratio) -2 -1 0 1 2at 1935.466 kb on - strand, within Dsui_1836at 1935.567 kb on - strand, within Dsui_1836at 1935.569 kb on - strand, within Dsui_1836at 1935.577 kb on + strand, within Dsui_1836at 1935.839 kb on + strand, within Dsui_1836at 1935.844 kb on + strand, within Dsui_1836at 1936.198 kb on - strand, within Dsui_1837at 1936.235 kb on - strand, within Dsui_1837at 1936.277 kb on + strandat 1936.353 kb on + strand, within Dsui_1837at 1936.361 kb on + strand, within Dsui_1837at 1936.361 kb on + strandat 1936.383 kb on + strand, within Dsui_1837at 1936.664 kb on - strand, within Dsui_1838at 1936.712 kb on - strand, within Dsui_1838at 1936.756 kb on - strand, within Dsui_1838at 1936.758 kb on + strand, within Dsui_1838at 1936.758 kb on + strand, within Dsui_1838at 1936.848 kb on + strand, within Dsui_1838at 1936.989 kb on - strand, within Dsui_1838at 1937.110 kb on - strand, within Dsui_1838at 1937.112 kb on + strand, within Dsui_1838at 1937.147 kb on + strand, within Dsui_1838at 1937.223 kb on - strandat 1937.224 kb on + strandat 1937.243 kb on + strandat 1937.251 kb on - strandat 1937.266 kb on - strandat 1937.345 kb on + strandat 1937.353 kb on - strand, within Dsui_1839at 1937.358 kb on - strand, within Dsui_1839at 1937.466 kb on - strand, within Dsui_1839at 1937.620 kb on - strand, within Dsui_1839at 1937.667 kb on + strandat 1937.760 kb on + strand, within Dsui_1840at 1937.760 kb on + strand, within Dsui_1840at 1937.770 kb on + strand, within Dsui_1840at 1937.778 kb on - strand, within Dsui_1840at 1937.779 kb on + strand, within Dsui_1840at 1937.862 kb on - strand, within Dsui_1840at 1937.873 kb on - strand, within Dsui_1840at 1937.875 kb on + strand, within Dsui_1840at 1937.907 kb on + strandat 1937.909 kb on + strandat 1937.941 kb on + strandat 1937.986 kb on + strandat 1938.000 kb on + strandat 1938.040 kb on - strand, within Dsui_1841at 1938.076 kb on - strandat 1938.129 kb on + strand, within Dsui_1841

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml
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1,935,466 - Dsui_1836 0.45 +0.7
1,935,567 - Dsui_1836 0.54 +0.7
1,935,569 - Dsui_1836 0.54 -0.8
1,935,577 + Dsui_1836 0.54 -0.3
1,935,839 + Dsui_1836 0.76 +0.7
1,935,844 + Dsui_1836 0.77 +0.7
1,936,198 - Dsui_1837 0.19 -0.6
1,936,235 - Dsui_1837 0.30 +1.9
1,936,277 + +0.7
1,936,353 + Dsui_1837 0.66 +0.7
1,936,361 + Dsui_1837 0.69 -0.3
1,936,361 + +0.7
1,936,383 + Dsui_1837 0.75 -2.1
1,936,664 - Dsui_1838 0.26 +0.1
1,936,712 - Dsui_1838 0.32 -0.0
1,936,756 - Dsui_1838 0.38 -0.1
1,936,758 + Dsui_1838 0.38 -0.8
1,936,758 + Dsui_1838 0.38 -2.4
1,936,848 + Dsui_1838 0.50 -1.8
1,936,989 - Dsui_1838 0.68 -0.4
1,937,110 - Dsui_1838 0.84 -0.1
1,937,112 + Dsui_1838 0.85 -1.3
1,937,147 + Dsui_1838 0.89 -2.1
1,937,223 - +0.2
1,937,224 + -0.3
1,937,243 + -1.3
1,937,251 - +0.4
1,937,266 - -0.1
1,937,345 + +0.7
1,937,353 - Dsui_1839 0.11 -1.8
1,937,358 - Dsui_1839 0.12 -1.3
1,937,466 - Dsui_1839 0.39 +0.7
1,937,620 - Dsui_1839 0.78 -0.3
1,937,667 + +0.3
1,937,760 + Dsui_1840 0.22 -0.8
1,937,760 + Dsui_1840 0.22 +0.7
1,937,770 + Dsui_1840 0.27 -2.5
1,937,778 - Dsui_1840 0.31 -0.8
1,937,779 + Dsui_1840 0.31 +0.7
1,937,862 - Dsui_1840 0.74 -0.3
1,937,873 - Dsui_1840 0.79 -2.1
1,937,875 + Dsui_1840 0.81 -0.8
1,937,907 + -0.3
1,937,909 + +0.7
1,937,941 + -0.8
1,937,986 + -0.3
1,938,000 + -0.3
1,938,040 - Dsui_1841 0.14 -0.2
1,938,076 - -0.2
1,938,129 + Dsui_1841 0.35 +0.8

Or see this region's nucleotide sequence