Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1742 and Dsui_1743 overlap by 1 nucleotides Dsui_1743 and Dsui_1744 are separated by 13 nucleotides Dsui_1744 and Dsui_1745 overlap by 4 nucleotides Dsui_1745 and Dsui_1746 overlap by 4 nucleotides
Dsui_1742: Dsui_1742 - flagellar hook-associated protein 3, at 1,831,612 to 1,832,580
_1742
Dsui_1743: Dsui_1743 - hypothetical protein, at 1,832,580 to 1,833,044
_1743
Dsui_1744: Dsui_1744 - flagellar biosynthetic protein FliR, at 1,833,058 to 1,833,843
_1744
Dsui_1745: Dsui_1745 - flagellar biosynthetic protein FliQ, at 1,833,840 to 1,834,109
_1745
Dsui_1746: Dsui_1746 - flagellar biosynthetic protein FliP, at 1,834,106 to 1,834,858
_1746
Position (kb)
1833
1834 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1832.067 kb on - strand, within Dsui_1742 at 1832.071 kb on + strand, within Dsui_1742 at 1832.123 kb on - strand, within Dsui_1742 at 1832.123 kb on - strand, within Dsui_1742 at 1832.213 kb on + strand, within Dsui_1742 at 1832.213 kb on + strand, within Dsui_1742 at 1832.213 kb on + strand, within Dsui_1742 at 1832.213 kb on + strand, within Dsui_1742 at 1832.213 kb on + strand, within Dsui_1742 at 1832.213 kb on + strand, within Dsui_1742 at 1832.218 kb on + strand, within Dsui_1742 at 1832.307 kb on - strand, within Dsui_1742 at 1832.311 kb on + strand, within Dsui_1742 at 1832.319 kb on - strand, within Dsui_1742 at 1832.344 kb on + strand, within Dsui_1742 at 1832.437 kb on + strand, within Dsui_1742 at 1832.472 kb on + strand, within Dsui_1742 at 1832.488 kb on - strand at 1832.517 kb on + strand at 1832.517 kb on + strand at 1832.517 kb on + strand at 1832.517 kb on + strand at 1832.525 kb on - strand at 1832.525 kb on - strand at 1832.525 kb on - strand at 1832.549 kb on + strand at 1832.555 kb on + strand at 1832.555 kb on + strand at 1832.563 kb on - strand at 1832.563 kb on - strand at 1832.599 kb on - strand at 1832.602 kb on - strand at 1832.664 kb on - strand, within Dsui_1743 at 1832.675 kb on - strand, within Dsui_1743 at 1832.679 kb on + strand, within Dsui_1743 at 1832.682 kb on - strand, within Dsui_1743 at 1832.687 kb on - strand, within Dsui_1743 at 1832.813 kb on + strand, within Dsui_1743 at 1832.821 kb on - strand, within Dsui_1743 at 1832.875 kb on - strand, within Dsui_1743 at 1832.916 kb on - strand, within Dsui_1743 at 1833.007 kb on + strand at 1833.062 kb on + strand at 1833.083 kb on - strand at 1833.088 kb on - strand at 1833.134 kb on + strand at 1833.134 kb on + strand at 1833.134 kb on + strand at 1833.139 kb on + strand, within Dsui_1744 at 1833.142 kb on - strand, within Dsui_1744 at 1833.158 kb on - strand, within Dsui_1744 at 1833.165 kb on + strand, within Dsui_1744 at 1833.165 kb on + strand, within Dsui_1744 at 1833.173 kb on - strand, within Dsui_1744 at 1833.240 kb on + strand, within Dsui_1744 at 1833.285 kb on + strand, within Dsui_1744 at 1833.296 kb on + strand, within Dsui_1744 at 1833.306 kb on + strand, within Dsui_1744 at 1833.325 kb on - strand, within Dsui_1744 at 1833.339 kb on + strand at 1833.347 kb on - strand, within Dsui_1744 at 1833.383 kb on + strand, within Dsui_1744 at 1833.391 kb on - strand, within Dsui_1744 at 1833.444 kb on + strand, within Dsui_1744 at 1833.452 kb on - strand, within Dsui_1744 at 1833.583 kb on - strand, within Dsui_1744 at 1833.639 kb on - strand, within Dsui_1744 at 1833.646 kb on - strand, within Dsui_1744 at 1833.663 kb on + strand, within Dsui_1744 at 1833.827 kb on + strand at 1833.828 kb on + strand at 1833.897 kb on - strand, within Dsui_1745 at 1833.965 kb on + strand, within Dsui_1745 at 1834.037 kb on + strand, within Dsui_1745 at 1834.064 kb on + strand, within Dsui_1745 at 1834.160 kb on - strand at 1834.179 kb on - strand at 1834.345 kb on + strand, within Dsui_1746 at 1834.353 kb on - strand, within Dsui_1746 at 1834.515 kb on + strand, within Dsui_1746 at 1834.515 kb on + strand, within Dsui_1746 at 1834.515 kb on + strand, within Dsui_1746 at 1834.523 kb on - strand, within Dsui_1746 at 1834.523 kb on - strand, within Dsui_1746 at 1834.523 kb on - strand, within Dsui_1746 at 1834.726 kb on + strand, within Dsui_1746 at 1834.728 kb on + strand, within Dsui_1746 at 1834.734 kb on - strand, within Dsui_1746 at 1834.736 kb on - strand, within Dsui_1746 at 1834.785 kb on + strand at 1834.785 kb on + strand at 1834.789 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 1,832,067 - Dsui_1742 0.47 -1.0 1,832,071 + Dsui_1742 0.47 +0.6 1,832,123 - Dsui_1742 0.53 -1.0 1,832,123 - Dsui_1742 0.53 -1.0 1,832,213 + Dsui_1742 0.62 +0.6 1,832,213 + Dsui_1742 0.62 -0.4 1,832,213 + Dsui_1742 0.62 +0.6 1,832,213 + Dsui_1742 0.62 -0.4 1,832,213 + Dsui_1742 0.62 -1.0 1,832,213 + Dsui_1742 0.62 +0.6 1,832,218 + Dsui_1742 0.63 -1.0 1,832,307 - Dsui_1742 0.72 +0.6 1,832,311 + Dsui_1742 0.72 -2.7 1,832,319 - Dsui_1742 0.73 -2.2 1,832,344 + Dsui_1742 0.76 +0.6 1,832,437 + Dsui_1742 0.85 +0.6 1,832,472 + Dsui_1742 0.89 -0.7 1,832,488 - +0.6 1,832,517 + -2.4 1,832,517 + +0.0 1,832,517 + +0.0 1,832,517 + -1.0 1,832,525 - +0.6 1,832,525 - -0.4 1,832,525 - -2.8 1,832,549 + -0.7 1,832,555 + -2.4 1,832,555 + -1.8 1,832,563 - -1.4 1,832,563 - -1.7 1,832,599 - -0.4 1,832,602 - +0.6 1,832,664 - Dsui_1743 0.18 -1.0 1,832,675 - Dsui_1743 0.20 +0.6 1,832,679 + Dsui_1743 0.21 -1.4 1,832,682 - Dsui_1743 0.22 -1.0 1,832,687 - Dsui_1743 0.23 -0.4 1,832,813 + Dsui_1743 0.50 +0.6 1,832,821 - Dsui_1743 0.52 +0.6 1,832,875 - Dsui_1743 0.63 -1.6 1,832,916 - Dsui_1743 0.72 +0.5 1,833,007 + -2.2 1,833,062 + +0.6 1,833,083 - -1.1 1,833,088 - -0.1 1,833,134 + -0.4 1,833,134 + +0.6 1,833,134 + +0.6 1,833,139 + Dsui_1744 0.10 +0.6 1,833,142 - Dsui_1744 0.11 +1.0 1,833,158 - Dsui_1744 0.13 -0.6 1,833,165 + Dsui_1744 0.14 +0.6 1,833,165 + Dsui_1744 0.14 +0.6 1,833,173 - Dsui_1744 0.15 -0.7 1,833,240 + Dsui_1744 0.23 -1.4 1,833,285 + Dsui_1744 0.29 -1.0 1,833,296 + Dsui_1744 0.30 -1.0 1,833,306 + Dsui_1744 0.32 -2.2 1,833,325 - Dsui_1744 0.34 -0.7 1,833,339 + +0.6 1,833,347 - Dsui_1744 0.37 -0.0 1,833,383 + Dsui_1744 0.41 -0.4 1,833,391 - Dsui_1744 0.42 +0.3 1,833,444 + Dsui_1744 0.49 -1.0 1,833,452 - Dsui_1744 0.50 -0.7 1,833,583 - Dsui_1744 0.67 -0.1 1,833,639 - Dsui_1744 0.74 +0.1 1,833,646 - Dsui_1744 0.75 -0.1 1,833,663 + Dsui_1744 0.77 -1.4 1,833,827 + -2.2 1,833,828 + +0.6 1,833,897 - Dsui_1745 0.21 -0.4 1,833,965 + Dsui_1745 0.46 +0.6 1,834,037 + Dsui_1745 0.73 -1.0 1,834,064 + Dsui_1745 0.83 -0.4 1,834,160 - -0.7 1,834,179 - -0.5 1,834,345 + Dsui_1746 0.32 -1.0 1,834,353 - Dsui_1746 0.33 +0.3 1,834,515 + Dsui_1746 0.54 +0.6 1,834,515 + Dsui_1746 0.54 +0.6 1,834,515 + Dsui_1746 0.54 +0.6 1,834,523 - Dsui_1746 0.55 -0.1 1,834,523 - Dsui_1746 0.55 +0.4 1,834,523 - Dsui_1746 0.55 -0.7 1,834,726 + Dsui_1746 0.82 +0.6 1,834,728 + Dsui_1746 0.83 +0.6 1,834,734 - Dsui_1746 0.83 +0.0 1,834,736 - Dsui_1746 0.84 -0.2 1,834,785 + -0.4 1,834,785 + +0.6 1,834,789 + -2.0
Or see this region's nucleotide sequence