Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1603 and Dsui_1604 are separated by 275 nucleotides Dsui_1604 and Dsui_1605 are separated by 188 nucleotides
Dsui_1603: Dsui_1603 - phosphoenolpyruvate carboxylase, at 1,684,012 to 1,686,819
_1603
Dsui_1604: Dsui_1604 - putative membrane protein, at 1,687,095 to 1,687,727
_1604
Dsui_1605: Dsui_1605 - acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II, at 1,687,916 to 1,689,505
_1605
Position (kb)
1687
1688 Strain fitness (log2 ratio)
-2
-1
0
1 at 1686.108 kb on + strand, within Dsui_1603 at 1686.175 kb on + strand at 1686.404 kb on + strand, within Dsui_1603 at 1686.686 kb on + strand at 1686.885 kb on - strand at 1686.900 kb on + strand at 1686.905 kb on + strand at 1686.905 kb on + strand at 1687.038 kb on + strand at 1687.046 kb on - strand at 1687.126 kb on + strand at 1687.158 kb on - strand at 1687.183 kb on - strand, within Dsui_1604 at 1687.195 kb on + strand, within Dsui_1604 at 1687.204 kb on - strand, within Dsui_1604 at 1687.247 kb on + strand, within Dsui_1604 at 1687.268 kb on + strand, within Dsui_1604 at 1687.338 kb on - strand, within Dsui_1604 at 1687.340 kb on + strand, within Dsui_1604 at 1687.348 kb on - strand at 1687.356 kb on + strand, within Dsui_1604 at 1687.375 kb on + strand, within Dsui_1604 at 1687.416 kb on - strand, within Dsui_1604 at 1687.557 kb on - strand, within Dsui_1604 at 1687.577 kb on + strand, within Dsui_1604 at 1687.610 kb on - strand, within Dsui_1604 at 1687.667 kb on - strand at 1688.049 kb on + strand at 1688.062 kb on - strand at 1688.074 kb on + strand at 1688.120 kb on - strand, within Dsui_1605 at 1688.131 kb on + strand, within Dsui_1605 at 1688.182 kb on + strand, within Dsui_1605 at 1688.279 kb on - strand at 1688.491 kb on + strand at 1688.491 kb on + strand at 1688.491 kb on + strand at 1688.491 kb on + strand at 1688.504 kb on + strand, within Dsui_1605 at 1688.509 kb on + strand, within Dsui_1605 at 1688.584 kb on + strand at 1688.587 kb on - strand, within Dsui_1605 at 1688.652 kb on + strand, within Dsui_1605 at 1688.652 kb on + strand, within Dsui_1605 at 1688.660 kb on - strand, within Dsui_1605 at 1688.660 kb on - strand, within Dsui_1605 at 1688.665 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 1,686,108 + Dsui_1603 0.75 -1.0 1,686,175 + +0.5 1,686,404 + Dsui_1603 0.85 -0.5 1,686,686 + +0.5 1,686,885 - +0.5 1,686,900 + -1.0 1,686,905 + -0.0 1,686,905 + +0.5 1,687,038 + -0.5 1,687,046 - -1.5 1,687,126 + +0.7 1,687,158 - -1.8 1,687,183 - Dsui_1604 0.14 -1.0 1,687,195 + Dsui_1604 0.16 -1.7 1,687,204 - Dsui_1604 0.17 -2.3 1,687,247 + Dsui_1604 0.24 +0.5 1,687,268 + Dsui_1604 0.27 -1.8 1,687,338 - Dsui_1604 0.38 -1.0 1,687,340 + Dsui_1604 0.39 -1.8 1,687,348 - -0.5 1,687,356 + Dsui_1604 0.41 +0.2 1,687,375 + Dsui_1604 0.44 -2.5 1,687,416 - Dsui_1604 0.51 +0.5 1,687,557 - Dsui_1604 0.73 +0.5 1,687,577 + Dsui_1604 0.76 -2.0 1,687,610 - Dsui_1604 0.81 +0.5 1,687,667 - +0.5 1,688,049 + +0.5 1,688,062 - +0.5 1,688,074 + -2.6 1,688,120 - Dsui_1605 0.13 -1.0 1,688,131 + Dsui_1605 0.14 -1.5 1,688,182 + Dsui_1605 0.17 -0.5 1,688,279 - +0.5 1,688,491 + -1.0 1,688,491 + +0.5 1,688,491 + +0.5 1,688,491 + +0.5 1,688,504 + Dsui_1605 0.37 +0.5 1,688,509 + Dsui_1605 0.37 -1.0 1,688,584 + +0.5 1,688,587 - Dsui_1605 0.42 -1.8 1,688,652 + Dsui_1605 0.46 +0.5 1,688,652 + Dsui_1605 0.46 -1.8 1,688,660 - Dsui_1605 0.47 -2.0 1,688,660 - Dsui_1605 0.47 -1.0 1,688,665 - +0.5
Or see this region's nucleotide sequence