Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1589 and Dsui_1590 are separated by 13 nucleotides Dsui_1590 and Dsui_1591 are separated by 111 nucleotides Dsui_1591 and Dsui_1592 overlap by 4 nucleotides
Dsui_1589: Dsui_1589 - Nucleoside-diphosphate-sugar pyrophosphorylase family protein, at 1,669,899 to 1,670,582
_1589
Dsui_1590: Dsui_1590 - hypothetical protein, at 1,670,596 to 1,670,868
_1590
Dsui_1591: Dsui_1591 - Xaa-Pro aminopeptidase, at 1,670,980 to 1,672,281
_1591
Dsui_1592: Dsui_1592 - Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family, at 1,672,278 to 1,673,432
_1592
Position (kb)
1670
1671
1672
1673 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 1670.068 kb on - strand, within Dsui_1589 at 1670.075 kb on + strand, within Dsui_1589 at 1670.110 kb on - strand at 1670.186 kb on + strand, within Dsui_1589 at 1670.238 kb on + strand, within Dsui_1589 at 1670.479 kb on + strand, within Dsui_1589 at 1670.483 kb on + strand, within Dsui_1589 at 1670.500 kb on + strand, within Dsui_1589 at 1670.576 kb on + strand at 1670.807 kb on - strand at 1670.814 kb on + strand, within Dsui_1590 at 1670.819 kb on + strand, within Dsui_1590 at 1670.819 kb on + strand, within Dsui_1590 at 1670.850 kb on + strand at 1670.850 kb on + strand at 1670.850 kb on + strand at 1670.858 kb on - strand at 1670.858 kb on - strand at 1670.914 kb on - strand at 1671.246 kb on + strand, within Dsui_1591 at 1671.555 kb on + strand, within Dsui_1591 at 1671.555 kb on + strand, within Dsui_1591 at 1671.673 kb on + strand, within Dsui_1591 at 1671.685 kb on + strand, within Dsui_1591 at 1671.855 kb on + strand, within Dsui_1591 at 1671.944 kb on + strand, within Dsui_1591 at 1671.991 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 1,670,068 - Dsui_1589 0.25 +0.5 1,670,075 + Dsui_1589 0.26 -0.5 1,670,110 - +0.5 1,670,186 + Dsui_1589 0.42 +0.3 1,670,238 + Dsui_1589 0.50 +0.4 1,670,479 + Dsui_1589 0.85 +1.3 1,670,483 + Dsui_1589 0.85 +0.9 1,670,500 + Dsui_1589 0.88 -0.6 1,670,576 + +0.2 1,670,807 - +0.5 1,670,814 + Dsui_1590 0.80 +0.1 1,670,819 + Dsui_1590 0.82 +0.0 1,670,819 + Dsui_1590 0.82 +0.2 1,670,850 + -0.3 1,670,850 + +0.8 1,670,850 + -0.9 1,670,858 - -1.0 1,670,858 - +0.5 1,670,914 - +0.1 1,671,246 + Dsui_1591 0.20 +3.4 1,671,555 + Dsui_1591 0.44 +2.8 1,671,555 + Dsui_1591 0.44 +2.1 1,671,673 + Dsui_1591 0.53 +3.8 1,671,685 + Dsui_1591 0.54 +4.0 1,671,855 + Dsui_1591 0.67 +2.9 1,671,944 + Dsui_1591 0.74 +2.9 1,671,991 + +2.4
Or see this region's nucleotide sequence