Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1528 and Dsui_1529 overlap by 14 nucleotides Dsui_1529 and Dsui_1530 are separated by 31 nucleotides Dsui_1530 and Dsui_1531 overlap by 4 nucleotides
Dsui_1528: Dsui_1528 - signal transduction histidine kinase, at 1,589,872 to 1,591,311
_1528
Dsui_1529: Dsui_1529 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 1,591,298 to 1,592,008
_1529
Dsui_1530: Dsui_1530 - hypothetical protein, at 1,592,040 to 1,592,327
_1530
Dsui_1531: Dsui_1531 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 1,592,324 to 1,594,537
_1531
Position (kb)
1591
1592
1593 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1 at 1590.329 kb on - strand, within Dsui_1528 at 1590.382 kb on + strand, within Dsui_1528 at 1590.400 kb on - strand, within Dsui_1528 at 1590.506 kb on - strand, within Dsui_1528 at 1590.506 kb on - strand, within Dsui_1528 at 1590.533 kb on + strand, within Dsui_1528 at 1590.770 kb on - strand, within Dsui_1528 at 1590.770 kb on - strand, within Dsui_1528 at 1590.828 kb on - strand, within Dsui_1528 at 1590.849 kb on + strand at 1590.852 kb on + strand at 1590.980 kb on + strand at 1590.980 kb on + strand, within Dsui_1528 at 1590.988 kb on - strand, within Dsui_1528 at 1591.011 kb on - strand, within Dsui_1528 at 1591.030 kb on - strand, within Dsui_1528 at 1591.095 kb on - strand, within Dsui_1528 at 1591.168 kb on - strand at 1591.218 kb on + strand at 1591.273 kb on - strand at 1591.352 kb on - strand at 1591.401 kb on - strand at 1591.420 kb on + strand at 1591.475 kb on - strand, within Dsui_1529 at 1591.503 kb on + strand, within Dsui_1529 at 1591.726 kb on + strand, within Dsui_1529 at 1591.772 kb on + strand, within Dsui_1529 at 1591.797 kb on - strand, within Dsui_1529 at 1591.806 kb on + strand at 1591.809 kb on + strand, within Dsui_1529 at 1591.814 kb on - strand, within Dsui_1529 at 1591.824 kb on - strand, within Dsui_1529 at 1592.128 kb on + strand at 1592.216 kb on + strand, within Dsui_1530 at 1592.216 kb on + strand, within Dsui_1530 at 1592.224 kb on - strand, within Dsui_1530 at 1592.307 kb on + strand at 1592.368 kb on - strand at 1592.598 kb on + strand at 1592.712 kb on - strand, within Dsui_1531 at 1592.947 kb on + strand at 1592.982 kb on + strand, within Dsui_1531 at 1592.985 kb on - strand, within Dsui_1531
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 1,590,329 - Dsui_1528 0.32 -4.1 1,590,382 + Dsui_1528 0.35 -0.5 1,590,400 - Dsui_1528 0.37 -2.8 1,590,506 - Dsui_1528 0.44 -2.1 1,590,506 - Dsui_1528 0.44 -1.2 1,590,533 + Dsui_1528 0.46 -1.5 1,590,770 - Dsui_1528 0.62 -1.9 1,590,770 - Dsui_1528 0.62 -3.1 1,590,828 - Dsui_1528 0.66 -2.4 1,590,849 + -0.5 1,590,852 + +0.5 1,590,980 + +0.5 1,590,980 + Dsui_1528 0.77 +0.5 1,590,988 - Dsui_1528 0.78 -2.2 1,591,011 - Dsui_1528 0.79 -2.3 1,591,030 - Dsui_1528 0.80 -3.0 1,591,095 - Dsui_1528 0.85 -0.8 1,591,168 - -2.8 1,591,218 + +0.5 1,591,273 - -0.7 1,591,352 - -2.5 1,591,401 - +0.5 1,591,420 + +0.5 1,591,475 - Dsui_1529 0.25 -4.3 1,591,503 + Dsui_1529 0.29 -1.8 1,591,726 + Dsui_1529 0.60 -1.0 1,591,772 + Dsui_1529 0.67 -1.5 1,591,797 - Dsui_1529 0.70 -5.8 1,591,806 + +0.5 1,591,809 + Dsui_1529 0.72 +0.5 1,591,814 - Dsui_1529 0.73 -4.7 1,591,824 - Dsui_1529 0.74 -3.6 1,592,128 + +0.5 1,592,216 + Dsui_1530 0.61 -0.5 1,592,216 + Dsui_1530 0.61 +0.5 1,592,224 - Dsui_1530 0.64 +0.5 1,592,307 + -1.0 1,592,368 - -0.5 1,592,598 + +0.5 1,592,712 - Dsui_1531 0.18 -0.5 1,592,947 + +0.5 1,592,982 + Dsui_1531 0.30 +0.0 1,592,985 - Dsui_1531 0.30 -2.6
Or see this region's nucleotide sequence