Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1525 and Dsui_1526 are separated by 73 nucleotides Dsui_1526 and Dsui_1527 are separated by 635 nucleotides
Dsui_1525: Dsui_1525 - sulfate/thiosulfate-binding protein, at 1,587,583 to 1,588,590
_1525
Dsui_1526: Dsui_1526 - hypothetical protein, at 1,588,664 to 1,588,861
_1526
Dsui_1527: Dsui_1527 - hypothetical protein, at 1,589,497 to 1,589,706
_1527
Position (kb)
1588
1589 Strain fitness (log2 ratio)
-2
-1
0
1 at 1587.677 kb on - strand at 1587.692 kb on + strand, within Dsui_1525 at 1587.700 kb on - strand, within Dsui_1525 at 1587.700 kb on - strand, within Dsui_1525 at 1587.719 kb on - strand, within Dsui_1525 at 1587.757 kb on + strand, within Dsui_1525 at 1587.772 kb on - strand, within Dsui_1525 at 1587.839 kb on + strand, within Dsui_1525 at 1587.839 kb on + strand, within Dsui_1525 at 1587.923 kb on - strand, within Dsui_1525 at 1587.928 kb on + strand, within Dsui_1525 at 1587.964 kb on + strand, within Dsui_1525 at 1588.041 kb on - strand at 1588.148 kb on - strand at 1588.169 kb on - strand, within Dsui_1525 at 1588.211 kb on - strand, within Dsui_1525 at 1588.340 kb on - strand, within Dsui_1525 at 1588.376 kb on - strand, within Dsui_1525 at 1588.389 kb on + strand, within Dsui_1525 at 1588.389 kb on + strand, within Dsui_1525 at 1588.389 kb on + strand, within Dsui_1525 at 1588.507 kb on - strand at 1588.519 kb on + strand at 1588.519 kb on + strand at 1588.536 kb on - strand at 1588.571 kb on - strand at 1588.572 kb on + strand at 1588.572 kb on + strand at 1588.655 kb on + strand at 1588.726 kb on + strand, within Dsui_1526 at 1588.726 kb on + strand at 1588.734 kb on - strand, within Dsui_1526 at 1588.754 kb on + strand, within Dsui_1526 at 1588.782 kb on - strand, within Dsui_1526 at 1588.803 kb on - strand, within Dsui_1526 at 1588.803 kb on - strand, within Dsui_1526 at 1588.831 kb on + strand, within Dsui_1526 at 1588.870 kb on + strand at 1588.892 kb on - strand at 1588.922 kb on - strand at 1588.922 kb on - strand at 1589.161 kb on - strand at 1589.163 kb on + strand at 1589.164 kb on - strand at 1589.203 kb on + strand at 1589.218 kb on - strand at 1589.275 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 1,587,677 - -1.5 1,587,692 + Dsui_1525 0.11 -1.5 1,587,700 - Dsui_1525 0.12 -0.5 1,587,700 - Dsui_1525 0.12 -0.5 1,587,719 - Dsui_1525 0.13 +0.5 1,587,757 + Dsui_1525 0.17 -0.3 1,587,772 - Dsui_1525 0.19 -0.5 1,587,839 + Dsui_1525 0.25 +0.0 1,587,839 + Dsui_1525 0.25 -0.3 1,587,923 - Dsui_1525 0.34 -0.5 1,587,928 + Dsui_1525 0.34 -0.7 1,587,964 + Dsui_1525 0.38 -0.5 1,588,041 - -1.0 1,588,148 - +0.5 1,588,169 - Dsui_1525 0.58 -1.0 1,588,211 - Dsui_1525 0.62 -1.0 1,588,340 - Dsui_1525 0.75 -0.5 1,588,376 - Dsui_1525 0.79 -0.5 1,588,389 + Dsui_1525 0.80 -0.0 1,588,389 + Dsui_1525 0.80 -0.6 1,588,389 + Dsui_1525 0.80 +1.5 1,588,507 - +0.5 1,588,519 + -0.9 1,588,519 + -0.2 1,588,536 - -2.3 1,588,571 - +0.5 1,588,572 + +0.3 1,588,572 + +0.1 1,588,655 + +0.5 1,588,726 + Dsui_1526 0.31 -0.5 1,588,726 + +0.5 1,588,734 - Dsui_1526 0.35 -1.1 1,588,754 + Dsui_1526 0.45 +0.5 1,588,782 - Dsui_1526 0.60 +0.4 1,588,803 - Dsui_1526 0.70 -0.8 1,588,803 - Dsui_1526 0.70 -1.0 1,588,831 + Dsui_1526 0.84 -0.5 1,588,870 + +0.5 1,588,892 - -0.6 1,588,922 - +0.1 1,588,922 - -0.4 1,589,161 - -2.3 1,589,163 + -0.5 1,589,164 - +0.5 1,589,203 + -0.5 1,589,218 - -0.5 1,589,275 - -0.3
Or see this region's nucleotide sequence