Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1485 and Dsui_1488 are separated by 734 nucleotides Dsui_1488 and Dsui_1489 are separated by 28 nucleotides
Dsui_1485: Dsui_1485 - NC domain protein, at 1,549,537 to 1,549,905
_1485
Dsui_1488: Dsui_1488 - putative metal-dependent hydrolase, at 1,550,640 to 1,551,002
_1488
Dsui_1489: Dsui_1489 - hypothetical protein, at 1,551,031 to 1,552,383
_1489
Position (kb)
1550
1551
1552 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1549.757 kb on - strand, within Dsui_1485 at 1549.851 kb on + strand, within Dsui_1485 at 1549.893 kb on - strand at 1549.976 kb on + strand at 1550.007 kb on - strand at 1550.034 kb on - strand at 1550.072 kb on + strand at 1550.140 kb on - strand at 1550.184 kb on + strand at 1550.221 kb on - strand at 1550.273 kb on - strand at 1550.278 kb on - strand at 1550.411 kb on + strand at 1550.419 kb on - strand at 1550.690 kb on - strand, within Dsui_1488 at 1550.822 kb on + strand, within Dsui_1488 at 1550.894 kb on - strand, within Dsui_1488 at 1550.911 kb on - strand, within Dsui_1488 at 1550.911 kb on - strand, within Dsui_1488 at 1550.920 kb on + strand, within Dsui_1488 at 1550.920 kb on + strand, within Dsui_1488 at 1551.041 kb on - strand at 1551.091 kb on + strand at 1551.218 kb on - strand, within Dsui_1489 at 1551.315 kb on - strand, within Dsui_1489 at 1551.400 kb on - strand, within Dsui_1489 at 1551.479 kb on - strand, within Dsui_1489 at 1551.535 kb on - strand at 1551.596 kb on + strand, within Dsui_1489 at 1551.660 kb on + strand, within Dsui_1489 at 1551.660 kb on + strand, within Dsui_1489 at 1551.698 kb on + strand, within Dsui_1489 at 1551.799 kb on - strand, within Dsui_1489 at 1551.809 kb on - strand, within Dsui_1489 at 1551.809 kb on - strand, within Dsui_1489 at 1551.934 kb on + strand, within Dsui_1489 at 1551.949 kb on + strand, within Dsui_1489
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 1,549,757 - Dsui_1485 0.60 +0.5 1,549,851 + Dsui_1485 0.85 -0.2 1,549,893 - -0.5 1,549,976 + -0.2 1,550,007 - +0.5 1,550,034 - +0.5 1,550,072 + +0.5 1,550,140 - +0.5 1,550,184 + -0.3 1,550,221 - -2.3 1,550,273 - +0.5 1,550,278 - +0.5 1,550,411 + +0.5 1,550,419 - +0.5 1,550,690 - Dsui_1488 0.14 +0.5 1,550,822 + Dsui_1488 0.50 +0.5 1,550,894 - Dsui_1488 0.70 -0.5 1,550,911 - Dsui_1488 0.75 +0.5 1,550,911 - Dsui_1488 0.75 +0.5 1,550,920 + Dsui_1488 0.77 +0.5 1,550,920 + Dsui_1488 0.77 +0.5 1,551,041 - +0.5 1,551,091 + +0.5 1,551,218 - Dsui_1489 0.14 +0.5 1,551,315 - Dsui_1489 0.21 -1.8 1,551,400 - Dsui_1489 0.27 -0.5 1,551,479 - Dsui_1489 0.33 -0.5 1,551,535 - +0.5 1,551,596 + Dsui_1489 0.42 +0.5 1,551,660 + Dsui_1489 0.46 +0.5 1,551,660 + Dsui_1489 0.46 -2.1 1,551,698 + Dsui_1489 0.49 +2.1 1,551,799 - Dsui_1489 0.57 -1.1 1,551,809 - Dsui_1489 0.58 -0.5 1,551,809 - Dsui_1489 0.58 -1.5 1,551,934 + Dsui_1489 0.67 -0.5 1,551,949 + Dsui_1489 0.68 +0.5
Or see this region's nucleotide sequence