Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1476 and Dsui_1477 overlap by 4 nucleotides Dsui_1477 and Dsui_1478 overlap by 4 nucleotides
Dsui_1476: Dsui_1476 - hypothetical protein, at 1,538,774 to 1,540,891
_1476
Dsui_1477: Dsui_1477 - hypothetical protein, at 1,540,888 to 1,543,035
_1477
Dsui_1478: Dsui_1478 - hypothetical protein, at 1,543,032 to 1,543,517
_1478
Position (kb)
1540
1541
1542
1543
1544 Strain fitness (log2 ratio)
-2
-1
0
1 at 1539.898 kb on - strand, within Dsui_1476 at 1539.907 kb on + strand, within Dsui_1476 at 1539.909 kb on + strand, within Dsui_1476 at 1539.917 kb on + strand, within Dsui_1476 at 1539.917 kb on - strand, within Dsui_1476 at 1539.922 kb on + strand, within Dsui_1476 at 1540.003 kb on + strand, within Dsui_1476 at 1540.026 kb on - strand, within Dsui_1476 at 1540.043 kb on - strand, within Dsui_1476 at 1540.045 kb on - strand, within Dsui_1476 at 1540.063 kb on + strand, within Dsui_1476 at 1540.089 kb on - strand, within Dsui_1476 at 1540.137 kb on + strand, within Dsui_1476 at 1540.177 kb on + strand, within Dsui_1476 at 1540.231 kb on - strand, within Dsui_1476 at 1540.316 kb on + strand, within Dsui_1476 at 1540.351 kb on + strand, within Dsui_1476 at 1540.459 kb on + strand, within Dsui_1476 at 1540.564 kb on + strand, within Dsui_1476 at 1540.611 kb on + strand, within Dsui_1476 at 1540.613 kb on + strand, within Dsui_1476 at 1540.804 kb on - strand at 1540.835 kb on + strand at 1540.880 kb on + strand at 1540.956 kb on + strand at 1540.972 kb on - strand at 1541.005 kb on + strand at 1541.010 kb on + strand at 1541.013 kb on - strand at 1541.117 kb on - strand, within Dsui_1477 at 1541.143 kb on - strand, within Dsui_1477 at 1541.165 kb on - strand, within Dsui_1477 at 1541.259 kb on - strand, within Dsui_1477 at 1541.263 kb on - strand, within Dsui_1477 at 1541.276 kb on + strand, within Dsui_1477 at 1541.288 kb on + strand, within Dsui_1477 at 1541.477 kb on - strand, within Dsui_1477 at 1541.505 kb on + strand, within Dsui_1477 at 1541.522 kb on - strand, within Dsui_1477 at 1541.537 kb on + strand, within Dsui_1477 at 1541.545 kb on - strand, within Dsui_1477 at 1541.609 kb on - strand, within Dsui_1477 at 1541.721 kb on - strand, within Dsui_1477 at 1541.748 kb on + strand, within Dsui_1477 at 1541.774 kb on + strand, within Dsui_1477 at 1541.849 kb on + strand, within Dsui_1477 at 1541.988 kb on - strand, within Dsui_1477 at 1542.021 kb on - strand, within Dsui_1477 at 1542.031 kb on - strand, within Dsui_1477 at 1542.106 kb on - strand, within Dsui_1477 at 1542.198 kb on - strand, within Dsui_1477 at 1542.208 kb on - strand, within Dsui_1477 at 1542.240 kb on - strand, within Dsui_1477 at 1542.263 kb on + strand, within Dsui_1477 at 1542.325 kb on - strand, within Dsui_1477 at 1542.357 kb on + strand, within Dsui_1477 at 1542.407 kb on - strand, within Dsui_1477 at 1542.437 kb on + strand, within Dsui_1477 at 1542.473 kb on + strand, within Dsui_1477 at 1542.481 kb on - strand, within Dsui_1477 at 1542.606 kb on + strand, within Dsui_1477 at 1542.809 kb on + strand, within Dsui_1477 at 1542.907 kb on - strand at 1542.907 kb on - strand at 1542.999 kb on + strand at 1543.043 kb on + strand at 1543.051 kb on - strand at 1543.171 kb on - strand, within Dsui_1478 at 1543.500 kb on - strand at 1543.628 kb on - strand at 1543.776 kb on - strand at 1543.859 kb on - strand at 1543.943 kb on - strand at 1543.961 kb on - strand at 1543.964 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 1,539,898 - Dsui_1476 0.53 -2.1 1,539,907 + Dsui_1476 0.53 +0.2 1,539,909 + Dsui_1476 0.54 -0.5 1,539,917 + Dsui_1476 0.54 +0.1 1,539,917 - Dsui_1476 0.54 +0.5 1,539,922 + Dsui_1476 0.54 -0.2 1,540,003 + Dsui_1476 0.58 -0.7 1,540,026 - Dsui_1476 0.59 +0.5 1,540,043 - Dsui_1476 0.60 +0.5 1,540,045 - Dsui_1476 0.60 -2.5 1,540,063 + Dsui_1476 0.61 -0.6 1,540,089 - Dsui_1476 0.62 +0.5 1,540,137 + Dsui_1476 0.64 -1.1 1,540,177 + Dsui_1476 0.66 -1.2 1,540,231 - Dsui_1476 0.69 +0.5 1,540,316 + Dsui_1476 0.73 +0.6 1,540,351 + Dsui_1476 0.74 +0.2 1,540,459 + Dsui_1476 0.80 -0.5 1,540,564 + Dsui_1476 0.85 +0.2 1,540,611 + Dsui_1476 0.87 -1.2 1,540,613 + Dsui_1476 0.87 +0.2 1,540,804 - -0.5 1,540,835 + -0.5 1,540,880 + -0.5 1,540,956 + -0.2 1,540,972 - -0.5 1,541,005 + -0.1 1,541,010 + -0.5 1,541,013 - -1.1 1,541,117 - Dsui_1477 0.11 -1.1 1,541,143 - Dsui_1477 0.12 -2.3 1,541,165 - Dsui_1477 0.13 -0.5 1,541,259 - Dsui_1477 0.17 +0.5 1,541,263 - Dsui_1477 0.17 -2.1 1,541,276 + Dsui_1477 0.18 -0.3 1,541,288 + Dsui_1477 0.19 -0.3 1,541,477 - Dsui_1477 0.27 +0.5 1,541,505 + Dsui_1477 0.29 +1.7 1,541,522 - Dsui_1477 0.30 -1.5 1,541,537 + Dsui_1477 0.30 +0.1 1,541,545 - Dsui_1477 0.31 +0.5 1,541,609 - Dsui_1477 0.34 +0.5 1,541,721 - Dsui_1477 0.39 -2.5 1,541,748 + Dsui_1477 0.40 +0.5 1,541,774 + Dsui_1477 0.41 -0.7 1,541,849 + Dsui_1477 0.45 -0.2 1,541,988 - Dsui_1477 0.51 +0.5 1,542,021 - Dsui_1477 0.53 +0.5 1,542,031 - Dsui_1477 0.53 -0.5 1,542,106 - Dsui_1477 0.57 -0.5 1,542,198 - Dsui_1477 0.61 -0.5 1,542,208 - Dsui_1477 0.61 +0.5 1,542,240 - Dsui_1477 0.63 -0.5 1,542,263 + Dsui_1477 0.64 -0.4 1,542,325 - Dsui_1477 0.67 -1.1 1,542,357 + Dsui_1477 0.68 -0.1 1,542,407 - Dsui_1477 0.71 -1.1 1,542,437 + Dsui_1477 0.72 -0.2 1,542,473 + Dsui_1477 0.74 -0.3 1,542,481 - Dsui_1477 0.74 +0.5 1,542,606 + Dsui_1477 0.80 -0.9 1,542,809 + Dsui_1477 0.89 -1.6 1,542,907 - -1.5 1,542,907 - +0.5 1,542,999 + -0.0 1,543,043 + -0.2 1,543,051 - +0.5 1,543,171 - Dsui_1478 0.29 +0.5 1,543,500 - -0.5 1,543,628 - +0.5 1,543,776 - +0.5 1,543,859 - -0.5 1,543,943 - -0.5 1,543,961 - -2.7 1,543,964 - +0.5
Or see this region's nucleotide sequence