Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1471 and Dsui_1472 are separated by 4 nucleotides Dsui_1472 and Dsui_1473 are separated by 118 nucleotides Dsui_1473 and Dsui_1475 are separated by 461 nucleotides
Dsui_1471: Dsui_1471 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 1,534,166 to 1,534,978
_1471
Dsui_1472: Dsui_1472 - deoxynucleoside kinase, at 1,534,983 to 1,535,657
_1472
Dsui_1473: Dsui_1473 - methyl-accepting chemotaxis protein, at 1,535,776 to 1,536,906
_1473
Dsui_1475: Dsui_1475 - hypothetical protein, at 1,537,368 to 1,538,777
_1475
Position (kb)
1535
1536
1537 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1535.159 kb on + strand, within Dsui_1472 at 1535.279 kb on + strand, within Dsui_1472 at 1535.303 kb on + strand, within Dsui_1472 at 1535.389 kb on - strand, within Dsui_1472 at 1535.466 kb on + strand, within Dsui_1472 at 1535.536 kb on - strand, within Dsui_1472 at 1535.781 kb on + strand at 1535.789 kb on - strand at 1535.828 kb on - strand at 1535.946 kb on + strand, within Dsui_1473 at 1535.988 kb on + strand, within Dsui_1473 at 1535.993 kb on - strand at 1535.998 kb on + strand, within Dsui_1473 at 1536.004 kb on + strand, within Dsui_1473 at 1536.102 kb on + strand, within Dsui_1473 at 1536.102 kb on + strand, within Dsui_1473 at 1536.102 kb on - strand, within Dsui_1473 at 1536.102 kb on - strand, within Dsui_1473 at 1536.110 kb on - strand, within Dsui_1473 at 1536.110 kb on - strand, within Dsui_1473 at 1536.136 kb on - strand, within Dsui_1473 at 1536.159 kb on - strand, within Dsui_1473 at 1536.250 kb on + strand, within Dsui_1473 at 1536.273 kb on + strand, within Dsui_1473 at 1536.311 kb on + strand, within Dsui_1473 at 1536.480 kb on + strand, within Dsui_1473 at 1536.488 kb on - strand, within Dsui_1473 at 1536.531 kb on + strand, within Dsui_1473 at 1536.531 kb on + strand, within Dsui_1473 at 1536.598 kb on - strand, within Dsui_1473 at 1536.625 kb on + strand, within Dsui_1473 at 1536.694 kb on - strand, within Dsui_1473 at 1536.696 kb on + strand, within Dsui_1473 at 1536.711 kb on + strand, within Dsui_1473 at 1536.719 kb on - strand, within Dsui_1473 at 1536.774 kb on + strand, within Dsui_1473 at 1536.909 kb on + strand at 1536.990 kb on + strand at 1536.998 kb on - strand at 1537.032 kb on + strand at 1537.042 kb on + strand at 1537.042 kb on + strand at 1537.051 kb on - strand at 1537.068 kb on + strand at 1537.113 kb on - strand at 1537.122 kb on - strand at 1537.128 kb on - strand at 1537.156 kb on + strand at 1537.173 kb on - strand at 1537.221 kb on + strand at 1537.237 kb on - strand at 1537.245 kb on + strand at 1537.250 kb on + strand at 1537.253 kb on - strand at 1537.253 kb on - strand at 1537.309 kb on - strand at 1537.357 kb on + strand at 1537.370 kb on + strand at 1537.380 kb on - strand at 1537.413 kb on - strand at 1537.413 kb on - strand at 1537.413 kb on - strand at 1537.413 kb on - strand at 1537.467 kb on + strand at 1537.467 kb on + strand at 1537.473 kb on + strand at 1537.475 kb on - strand at 1537.475 kb on - strand at 1537.482 kb on - strand at 1537.500 kb on + strand at 1537.532 kb on + strand, within Dsui_1475 at 1537.551 kb on + strand, within Dsui_1475 at 1537.603 kb on + strand, within Dsui_1475 at 1537.620 kb on + strand, within Dsui_1475 at 1537.628 kb on - strand, within Dsui_1475 at 1537.628 kb on - strand, within Dsui_1475 at 1537.633 kb on - strand, within Dsui_1475 at 1537.672 kb on + strand, within Dsui_1475 at 1537.706 kb on + strand, within Dsui_1475 at 1537.715 kb on + strand, within Dsui_1475 at 1537.755 kb on + strand, within Dsui_1475 at 1537.802 kb on + strand, within Dsui_1475 at 1537.802 kb on + strand, within Dsui_1475 at 1537.803 kb on + strand, within Dsui_1475 at 1537.870 kb on + strand, within Dsui_1475
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 1,535,159 + Dsui_1472 0.26 +0.6 1,535,279 + Dsui_1472 0.44 -0.5 1,535,303 + Dsui_1472 0.47 -2.5 1,535,389 - Dsui_1472 0.60 -0.1 1,535,466 + Dsui_1472 0.72 +0.5 1,535,536 - Dsui_1472 0.82 -0.3 1,535,781 + -1.1 1,535,789 - +0.5 1,535,828 - +0.5 1,535,946 + Dsui_1473 0.15 -0.5 1,535,988 + Dsui_1473 0.19 +0.5 1,535,993 - +0.5 1,535,998 + Dsui_1473 0.20 +0.5 1,536,004 + Dsui_1473 0.20 -1.5 1,536,102 + Dsui_1473 0.29 +0.5 1,536,102 + Dsui_1473 0.29 -0.5 1,536,102 - Dsui_1473 0.29 -2.3 1,536,102 - Dsui_1473 0.29 -2.1 1,536,110 - Dsui_1473 0.30 -0.5 1,536,110 - Dsui_1473 0.30 -3.2 1,536,136 - Dsui_1473 0.32 +0.5 1,536,159 - Dsui_1473 0.34 +0.5 1,536,250 + Dsui_1473 0.42 -1.1 1,536,273 + Dsui_1473 0.44 -1.8 1,536,311 + Dsui_1473 0.47 -0.5 1,536,480 + Dsui_1473 0.62 +0.5 1,536,488 - Dsui_1473 0.63 +0.5 1,536,531 + Dsui_1473 0.67 -0.5 1,536,531 + Dsui_1473 0.67 +0.5 1,536,598 - Dsui_1473 0.73 -1.1 1,536,625 + Dsui_1473 0.75 -0.5 1,536,694 - Dsui_1473 0.81 -1.8 1,536,696 + Dsui_1473 0.81 -1.5 1,536,711 + Dsui_1473 0.83 -1.0 1,536,719 - Dsui_1473 0.83 +0.5 1,536,774 + Dsui_1473 0.88 +0.5 1,536,909 + +0.5 1,536,990 + -1.5 1,536,998 - +0.5 1,537,032 + +0.5 1,537,042 + -0.5 1,537,042 + -0.5 1,537,051 - -2.0 1,537,068 + +0.5 1,537,113 - -0.9 1,537,122 - -2.3 1,537,128 - +0.8 1,537,156 + +0.5 1,537,173 - -1.0 1,537,221 + -0.5 1,537,237 - -0.5 1,537,245 + +0.5 1,537,250 + -0.5 1,537,253 - +0.1 1,537,253 - +1.5 1,537,309 - -2.5 1,537,357 + -0.6 1,537,370 + -0.3 1,537,380 - -0.5 1,537,413 - -0.5 1,537,413 - -0.5 1,537,413 - +0.5 1,537,413 - +0.5 1,537,467 + -0.7 1,537,467 + +0.6 1,537,473 + -0.2 1,537,475 - +0.5 1,537,475 - +0.5 1,537,482 - +0.5 1,537,500 + -0.2 1,537,532 + Dsui_1475 0.12 +0.6 1,537,551 + Dsui_1475 0.13 -0.3 1,537,603 + Dsui_1475 0.17 -0.0 1,537,620 + Dsui_1475 0.18 -0.3 1,537,628 - Dsui_1475 0.18 +0.5 1,537,628 - Dsui_1475 0.18 -1.1 1,537,633 - Dsui_1475 0.19 +0.5 1,537,672 + Dsui_1475 0.22 -0.0 1,537,706 + Dsui_1475 0.24 -0.2 1,537,715 + Dsui_1475 0.25 +0.6 1,537,755 + Dsui_1475 0.27 -0.2 1,537,802 + Dsui_1475 0.31 -0.4 1,537,802 + Dsui_1475 0.31 -0.2 1,537,803 + Dsui_1475 0.31 +0.0 1,537,870 + Dsui_1475 0.36 -0.4
Or see this region's nucleotide sequence