Strain Fitness in Dechlorosoma suillum PS around Dsui_1407

Experiment: ALP with Fusidic 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1404 and Dsui_1405 overlap by 4 nucleotidesDsui_1405 and Dsui_1406 are separated by 3 nucleotidesDsui_1406 and Dsui_1407 overlap by 8 nucleotidesDsui_1407 and Dsui_1408 are separated by 134 nucleotidesDsui_1408 and Dsui_1409 are separated by 24 nucleotides Dsui_1404: Dsui_1404 - ABC-type multidrug transport system, ATPase component, at 1,462,832 to 1,463,755 _1404 Dsui_1405: Dsui_1405 - ABC-type polysaccharide/polyol phosphate export systems, permease component, at 1,463,752 to 1,464,507 _1405 Dsui_1406: Dsui_1406 - putative transcriptional regulator, BolA superfamily, at 1,464,511 to 1,464,756 _1406 Dsui_1407: Dsui_1407 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 1,464,749 to 1,466,002 _1407 Dsui_1408: Dsui_1408 - NifZ domain-containing protein, at 1,466,137 to 1,466,406 _1408 Dsui_1409: Dsui_1409 - cation diffusion facilitator family transporter, at 1,466,431 to 1,467,318 _1409 Position (kb) 1464 1465 1466 1467Strain fitness (log2 ratio) -3 -2 -1 0 1at 1463.888 kb on + strand, within Dsui_1405at 1463.942 kb on + strand, within Dsui_1405at 1464.081 kb on - strand, within Dsui_1405at 1464.153 kb on + strand, within Dsui_1405at 1464.241 kb on - strand, within Dsui_1405at 1464.305 kb on - strand, within Dsui_1405at 1464.307 kb on + strand, within Dsui_1405at 1464.329 kb on + strand, within Dsui_1405at 1464.331 kb on - strand, within Dsui_1405at 1464.374 kb on - strandat 1464.467 kb on + strandat 1464.467 kb on + strandat 1466.127 kb on + strandat 1466.142 kb on - strandat 1466.365 kb on + strand, within Dsui_1408at 1466.384 kb on - strandat 1466.429 kb on + strandat 1466.436 kb on - strandat 1466.492 kb on - strandat 1466.504 kb on + strandat 1466.512 kb on - strandat 1466.531 kb on + strand, within Dsui_1409at 1466.586 kb on + strandat 1466.631 kb on + strand, within Dsui_1409at 1466.700 kb on + strandat 1466.714 kb on + strand, within Dsui_1409at 1466.811 kb on + strandat 1466.819 kb on - strand, within Dsui_1409at 1466.985 kb on - strand, within Dsui_1409

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml
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1,463,888 + Dsui_1405 0.18 -0.1
1,463,942 + Dsui_1405 0.25 -0.5
1,464,081 - Dsui_1405 0.44 +0.5
1,464,153 + Dsui_1405 0.53 -0.6
1,464,241 - Dsui_1405 0.65 +0.5
1,464,305 - Dsui_1405 0.73 +0.5
1,464,307 + Dsui_1405 0.73 +0.5
1,464,329 + Dsui_1405 0.76 +0.3
1,464,331 - Dsui_1405 0.77 -0.5
1,464,374 - -0.5
1,464,467 + -0.2
1,464,467 + -2.1
1,466,127 + +0.5
1,466,142 - -1.5
1,466,365 + Dsui_1408 0.84 -2.5
1,466,384 - -1.8
1,466,429 + -1.5
1,466,436 - -2.1
1,466,492 - -3.2
1,466,504 + -1.8
1,466,512 - -1.1
1,466,531 + Dsui_1409 0.11 -1.1
1,466,586 + +0.5
1,466,631 + Dsui_1409 0.23 -1.1
1,466,700 + +0.5
1,466,714 + Dsui_1409 0.32 -1.1
1,466,811 + +0.5
1,466,819 - Dsui_1409 0.44 -0.5
1,466,985 - Dsui_1409 0.62 +0.5

Or see this region's nucleotide sequence