Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1393 and Dsui_1394 overlap by 4 nucleotides Dsui_1394 and Dsui_1395 are separated by 279 nucleotides
Dsui_1393: Dsui_1393 - type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 1,450,854 to 1,452,560
_1393
Dsui_1394: Dsui_1394 - hypothetical protein, at 1,452,557 to 1,453,534
_1394
Dsui_1395: Dsui_1395 - MSHA-type pilus biogenesis protein MshL, at 1,453,814 to 1,455,718
_1395
Position (kb)
1452
1453
1454 Strain fitness (log2 ratio)
-2
-1
0
1 at 1451.639 kb on + strand at 1451.639 kb on + strand, within Dsui_1393 at 1451.639 kb on + strand at 1451.647 kb on - strand at 1451.656 kb on + strand at 1451.668 kb on + strand, within Dsui_1393 at 1451.668 kb on - strand, within Dsui_1393 at 1451.932 kb on + strand, within Dsui_1393 at 1452.105 kb on - strand at 1452.112 kb on - strand, within Dsui_1393 at 1452.278 kb on - strand at 1452.462 kb on - strand at 1452.661 kb on - strand, within Dsui_1394 at 1452.784 kb on - strand, within Dsui_1394 at 1452.797 kb on + strand, within Dsui_1394 at 1452.830 kb on - strand, within Dsui_1394 at 1452.892 kb on - strand, within Dsui_1394 at 1453.053 kb on - strand at 1453.103 kb on - strand, within Dsui_1394 at 1453.431 kb on - strand, within Dsui_1394 at 1453.468 kb on - strand at 1453.789 kb on - strand at 1453.791 kb on + strand at 1454.147 kb on + strand, within Dsui_1395 at 1454.148 kb on + strand, within Dsui_1395 at 1454.205 kb on + strand at 1454.206 kb on + strand at 1454.253 kb on + strand, within Dsui_1395 at 1454.282 kb on + strand at 1454.352 kb on + strand at 1454.402 kb on + strand, within Dsui_1395 at 1454.456 kb on - strand, within Dsui_1395 at 1454.467 kb on + strand at 1454.467 kb on - strand, within Dsui_1395
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 1,451,639 + +0.5 1,451,639 + Dsui_1393 0.46 +0.5 1,451,639 + +0.5 1,451,647 - -0.5 1,451,656 + -0.5 1,451,668 + Dsui_1393 0.48 -0.5 1,451,668 - Dsui_1393 0.48 +0.5 1,451,932 + Dsui_1393 0.63 -0.5 1,452,105 - +0.5 1,452,112 - Dsui_1393 0.74 +0.5 1,452,278 - +0.5 1,452,462 - -0.5 1,452,661 - Dsui_1394 0.11 +0.5 1,452,784 - Dsui_1394 0.23 -2.1 1,452,797 + Dsui_1394 0.25 -1.1 1,452,830 - Dsui_1394 0.28 -1.8 1,452,892 - Dsui_1394 0.34 -2.0 1,453,053 - +0.5 1,453,103 - Dsui_1394 0.56 -1.5 1,453,431 - Dsui_1394 0.89 -1.5 1,453,468 - +0.5 1,453,789 - +0.5 1,453,791 + -0.5 1,454,147 + Dsui_1395 0.17 -1.1 1,454,148 + Dsui_1395 0.18 -0.5 1,454,205 + -1.1 1,454,206 + +0.5 1,454,253 + Dsui_1395 0.23 -0.5 1,454,282 + +0.5 1,454,352 + +0.5 1,454,402 + Dsui_1395 0.31 -0.5 1,454,456 - Dsui_1395 0.34 +0.5 1,454,467 + +0.5 1,454,467 - Dsui_1395 0.34 -0.1
Or see this region's nucleotide sequence