Strain Fitness in Dechlorosoma suillum PS around Dsui_1394

Experiment: ALP with Fusidic 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1393 and Dsui_1394 overlap by 4 nucleotidesDsui_1394 and Dsui_1395 are separated by 279 nucleotides Dsui_1393: Dsui_1393 - type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 1,450,854 to 1,452,560 _1393 Dsui_1394: Dsui_1394 - hypothetical protein, at 1,452,557 to 1,453,534 _1394 Dsui_1395: Dsui_1395 - MSHA-type pilus biogenesis protein MshL, at 1,453,814 to 1,455,718 _1395 Position (kb) 1452 1453 1454Strain fitness (log2 ratio) -2 -1 0 1at 1451.639 kb on + strandat 1451.639 kb on + strand, within Dsui_1393at 1451.639 kb on + strandat 1451.647 kb on - strandat 1451.656 kb on + strandat 1451.668 kb on + strand, within Dsui_1393at 1451.668 kb on - strand, within Dsui_1393at 1451.932 kb on + strand, within Dsui_1393at 1452.105 kb on - strandat 1452.112 kb on - strand, within Dsui_1393at 1452.278 kb on - strandat 1452.462 kb on - strandat 1452.661 kb on - strand, within Dsui_1394at 1452.784 kb on - strand, within Dsui_1394at 1452.797 kb on + strand, within Dsui_1394at 1452.830 kb on - strand, within Dsui_1394at 1452.892 kb on - strand, within Dsui_1394at 1453.053 kb on - strandat 1453.103 kb on - strand, within Dsui_1394at 1453.431 kb on - strand, within Dsui_1394at 1453.468 kb on - strandat 1453.789 kb on - strandat 1453.791 kb on + strandat 1454.147 kb on + strand, within Dsui_1395at 1454.148 kb on + strand, within Dsui_1395at 1454.205 kb on + strandat 1454.206 kb on + strandat 1454.253 kb on + strand, within Dsui_1395at 1454.282 kb on + strandat 1454.352 kb on + strandat 1454.402 kb on + strand, within Dsui_1395at 1454.456 kb on - strand, within Dsui_1395at 1454.467 kb on + strandat 1454.467 kb on - strand, within Dsui_1395

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml
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1,451,639 + +0.5
1,451,639 + Dsui_1393 0.46 +0.5
1,451,639 + +0.5
1,451,647 - -0.5
1,451,656 + -0.5
1,451,668 + Dsui_1393 0.48 -0.5
1,451,668 - Dsui_1393 0.48 +0.5
1,451,932 + Dsui_1393 0.63 -0.5
1,452,105 - +0.5
1,452,112 - Dsui_1393 0.74 +0.5
1,452,278 - +0.5
1,452,462 - -0.5
1,452,661 - Dsui_1394 0.11 +0.5
1,452,784 - Dsui_1394 0.23 -2.1
1,452,797 + Dsui_1394 0.25 -1.1
1,452,830 - Dsui_1394 0.28 -1.8
1,452,892 - Dsui_1394 0.34 -2.0
1,453,053 - +0.5
1,453,103 - Dsui_1394 0.56 -1.5
1,453,431 - Dsui_1394 0.89 -1.5
1,453,468 - +0.5
1,453,789 - +0.5
1,453,791 + -0.5
1,454,147 + Dsui_1395 0.17 -1.1
1,454,148 + Dsui_1395 0.18 -0.5
1,454,205 + -1.1
1,454,206 + +0.5
1,454,253 + Dsui_1395 0.23 -0.5
1,454,282 + +0.5
1,454,352 + +0.5
1,454,402 + Dsui_1395 0.31 -0.5
1,454,456 - Dsui_1395 0.34 +0.5
1,454,467 + +0.5
1,454,467 - Dsui_1395 0.34 -0.1

Or see this region's nucleotide sequence