Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1389 and Dsui_1390 are separated by 18 nucleotides Dsui_1390 and Dsui_1391 overlap by 4 nucleotides Dsui_1391 and Dsui_1392 are separated by 3 nucleotides
Dsui_1389: Dsui_1389 - hypothetical protein, at 1,446,979 to 1,447,482
_1389
Dsui_1390: Dsui_1390 - hypothetical protein, at 1,447,501 to 1,448,100
_1390
Dsui_1391: Dsui_1391 - hypothetical protein, at 1,448,097 to 1,449,641
_1391
Dsui_1392: Dsui_1392 - type II secretory pathway, component PulF, at 1,449,645 to 1,450,844
_1392
Position (kb)
1448
1449
1450 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1447.130 kb on - strand at 1447.277 kb on - strand at 1447.293 kb on + strand, within Dsui_1389 at 1447.299 kb on - strand, within Dsui_1389 at 1447.325 kb on + strand at 1447.450 kb on + strand at 1447.536 kb on - strand at 1447.550 kb on + strand at 1447.558 kb on - strand at 1447.558 kb on - strand at 1447.734 kb on - strand, within Dsui_1390 at 1447.735 kb on + strand at 1447.837 kb on + strand at 1447.897 kb on - strand, within Dsui_1390 at 1447.897 kb on - strand at 1447.926 kb on + strand at 1447.937 kb on + strand at 1448.041 kb on - strand at 1448.079 kb on + strand at 1448.154 kb on - strand at 1448.304 kb on - strand at 1448.328 kb on - strand, within Dsui_1391 at 1448.543 kb on + strand at 1448.543 kb on + strand at 1448.593 kb on - strand at 1448.614 kb on + strand at 1448.651 kb on - strand, within Dsui_1391 at 1448.659 kb on + strand, within Dsui_1391 at 1448.711 kb on + strand, within Dsui_1391 at 1448.736 kb on - strand at 1448.961 kb on + strand, within Dsui_1391 at 1449.197 kb on + strand, within Dsui_1391 at 1449.424 kb on + strand, within Dsui_1391 at 1449.449 kb on + strand, within Dsui_1391 at 1449.535 kb on - strand at 1449.590 kb on - strand at 1449.643 kb on + strand at 1449.812 kb on + strand, within Dsui_1392 at 1449.906 kb on + strand, within Dsui_1392 at 1449.975 kb on - strand at 1450.036 kb on - strand, within Dsui_1392 at 1450.236 kb on + strand, within Dsui_1392 at 1450.244 kb on - strand, within Dsui_1392 at 1450.292 kb on + strand, within Dsui_1392 at 1450.328 kb on - strand, within Dsui_1392 at 1450.457 kb on + strand, within Dsui_1392 at 1450.476 kb on - strand, within Dsui_1392 at 1450.479 kb on + strand, within Dsui_1392 at 1450.541 kb on + strand at 1450.545 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 1,447,130 - -1.8 1,447,277 - +0.5 1,447,293 + Dsui_1389 0.62 -1.8 1,447,299 - Dsui_1389 0.63 -0.5 1,447,325 + -0.5 1,447,450 + -0.5 1,447,536 - -0.5 1,447,550 + -0.5 1,447,558 - -2.8 1,447,558 - +0.5 1,447,734 - Dsui_1390 0.39 -1.1 1,447,735 + +0.5 1,447,837 + +0.5 1,447,897 - Dsui_1390 0.66 -1.8 1,447,897 - -1.5 1,447,926 + +0.5 1,447,937 + -1.1 1,448,041 - +0.5 1,448,079 + -1.8 1,448,154 - -0.5 1,448,304 - +0.5 1,448,328 - Dsui_1391 0.15 +0.5 1,448,543 + +0.5 1,448,543 + +0.5 1,448,593 - +0.5 1,448,614 + +0.5 1,448,651 - Dsui_1391 0.36 -0.5 1,448,659 + Dsui_1391 0.36 -1.5 1,448,711 + Dsui_1391 0.40 -1.8 1,448,736 - +0.5 1,448,961 + Dsui_1391 0.56 -0.5 1,449,197 + Dsui_1391 0.71 +0.5 1,449,424 + Dsui_1391 0.86 -0.5 1,449,449 + Dsui_1391 0.88 +0.5 1,449,535 - +0.5 1,449,590 - +0.5 1,449,643 + +0.5 1,449,812 + Dsui_1392 0.14 -2.3 1,449,906 + Dsui_1392 0.22 +1.5 1,449,975 - -1.1 1,450,036 - Dsui_1392 0.33 -0.5 1,450,236 + Dsui_1392 0.49 -1.1 1,450,244 - Dsui_1392 0.50 -1.5 1,450,292 + Dsui_1392 0.54 +0.5 1,450,328 - Dsui_1392 0.57 -0.5 1,450,457 + Dsui_1392 0.68 +0.5 1,450,476 - Dsui_1392 0.69 -0.5 1,450,479 + Dsui_1392 0.69 +0.5 1,450,541 + +0.5 1,450,545 - +0.5
Or see this region's nucleotide sequence