Strain Fitness in Dechlorosoma suillum PS around Dsui_1361

Experiment: ALP with Fusidic 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1360 and Dsui_1361 are separated by 184 nucleotidesDsui_1361 and Dsui_1362 are separated by 1 nucleotidesDsui_1362 and Dsui_1363 are separated by 12 nucleotidesDsui_1363 and Dsui_1364 are separated by 23 nucleotides Dsui_1360: Dsui_1360 - hypothetical protein, at 1,414,266 to 1,415,540 _1360 Dsui_1361: Dsui_1361 - diguanylate cyclase (GGDEF) domain-containing protein, at 1,415,725 to 1,416,501 _1361 Dsui_1362: Dsui_1362 - protein of unknown function (DUF1987), at 1,416,503 to 1,416,880 _1362 Dsui_1363: Dsui_1363 - hypothetical protein, at 1,416,893 to 1,417,441 _1363 Dsui_1364: Dsui_1364 - serine phosphatase RsbU, regulator of sigma subunit, at 1,417,465 to 1,419,462 _1364 Position (kb) 1415 1416 1417Strain fitness (log2 ratio) -3 -2 -1 0 1at 1414.809 kb on - strandat 1414.819 kb on - strand, within Dsui_1360at 1414.855 kb on - strandat 1414.884 kb on + strand, within Dsui_1360at 1414.958 kb on + strand, within Dsui_1360at 1415.001 kb on - strandat 1415.031 kb on + strandat 1415.076 kb on + strand, within Dsui_1360at 1415.266 kb on + strand, within Dsui_1360at 1415.302 kb on - strand, within Dsui_1360at 1415.339 kb on + strand, within Dsui_1360at 1415.339 kb on + strandat 1415.346 kb on + strandat 1415.353 kb on + strand, within Dsui_1360at 1415.454 kb on - strandat 1415.456 kb on + strandat 1415.728 kb on + strandat 1415.728 kb on + strandat 1415.728 kb on + strandat 1415.736 kb on - strandat 1415.827 kb on + strand, within Dsui_1361at 1415.832 kb on + strand, within Dsui_1361at 1415.832 kb on + strand, within Dsui_1361at 1416.135 kb on + strand, within Dsui_1361at 1416.152 kb on + strand, within Dsui_1361at 1416.160 kb on - strand, within Dsui_1361at 1416.201 kb on + strand, within Dsui_1361at 1416.214 kb on - strand, within Dsui_1361at 1416.245 kb on + strand, within Dsui_1361at 1416.245 kb on + strand, within Dsui_1361at 1416.257 kb on + strandat 1416.285 kb on + strand, within Dsui_1361at 1416.311 kb on + strand, within Dsui_1361at 1416.319 kb on - strand, within Dsui_1361at 1416.319 kb on - strand, within Dsui_1361at 1416.319 kb on - strand, within Dsui_1361at 1416.319 kb on - strand, within Dsui_1361at 1416.351 kb on + strand, within Dsui_1361at 1416.643 kb on + strand, within Dsui_1362at 1416.651 kb on - strand, within Dsui_1362at 1416.651 kb on - strand, within Dsui_1362at 1416.651 kb on - strand, within Dsui_1362at 1416.651 kb on - strand, within Dsui_1362at 1416.723 kb on + strand, within Dsui_1362at 1416.745 kb on - strand, within Dsui_1362at 1416.758 kb on + strand, within Dsui_1362at 1416.759 kb on + strand, within Dsui_1362at 1416.767 kb on - strand, within Dsui_1362at 1416.792 kb on - strand, within Dsui_1362at 1416.862 kb on - strandat 1416.873 kb on - strandat 1416.997 kb on + strand, within Dsui_1363at 1417.018 kb on - strand, within Dsui_1363at 1417.018 kb on - strand, within Dsui_1363at 1417.044 kb on - strand, within Dsui_1363at 1417.095 kb on - strand, within Dsui_1363at 1417.158 kb on - strand, within Dsui_1363at 1417.198 kb on + strand, within Dsui_1363at 1417.212 kb on - strand, within Dsui_1363at 1417.219 kb on + strand, within Dsui_1363at 1417.266 kb on - strand, within Dsui_1363at 1417.299 kb on + strand, within Dsui_1363at 1417.313 kb on + strand, within Dsui_1363at 1417.321 kb on - strand, within Dsui_1363at 1417.321 kb on - strand, within Dsui_1363at 1417.321 kb on - strand, within Dsui_1363at 1417.403 kb on - strandat 1417.468 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml
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1,414,809 - +0.5
1,414,819 - Dsui_1360 0.43 -1.8
1,414,855 - +0.5
1,414,884 + Dsui_1360 0.48 -0.5
1,414,958 + Dsui_1360 0.54 -0.5
1,415,001 - -0.5
1,415,031 + -1.1
1,415,076 + Dsui_1360 0.64 -1.5
1,415,266 + Dsui_1360 0.78 +0.5
1,415,302 - Dsui_1360 0.81 +0.5
1,415,339 + Dsui_1360 0.84 -0.5
1,415,339 + +0.5
1,415,346 + +0.5
1,415,353 + Dsui_1360 0.85 -1.5
1,415,454 - +0.5
1,415,456 + +1.1
1,415,728 + -0.5
1,415,728 + -1.5
1,415,728 + -1.8
1,415,736 - +1.0
1,415,827 + Dsui_1361 0.13 -2.1
1,415,832 + Dsui_1361 0.14 -0.7
1,415,832 + Dsui_1361 0.14 +0.9
1,416,135 + Dsui_1361 0.53 -3.4
1,416,152 + Dsui_1361 0.55 +0.5
1,416,160 - Dsui_1361 0.56 -0.5
1,416,201 + Dsui_1361 0.61 -1.1
1,416,214 - Dsui_1361 0.63 -0.3
1,416,245 + Dsui_1361 0.67 -1.5
1,416,245 + Dsui_1361 0.67 -0.5
1,416,257 + +0.5
1,416,285 + Dsui_1361 0.72 -1.8
1,416,311 + Dsui_1361 0.75 +0.5
1,416,319 - Dsui_1361 0.76 +0.2
1,416,319 - Dsui_1361 0.76 -0.9
1,416,319 - Dsui_1361 0.76 -0.6
1,416,319 - Dsui_1361 0.76 -0.6
1,416,351 + Dsui_1361 0.81 -0.5
1,416,643 + Dsui_1362 0.37 -0.5
1,416,651 - Dsui_1362 0.39 -0.4
1,416,651 - Dsui_1362 0.39 +0.3
1,416,651 - Dsui_1362 0.39 -0.0
1,416,651 - Dsui_1362 0.39 -0.6
1,416,723 + Dsui_1362 0.58 -0.5
1,416,745 - Dsui_1362 0.64 +0.3
1,416,758 + Dsui_1362 0.67 -0.5
1,416,759 + Dsui_1362 0.68 +0.5
1,416,767 - Dsui_1362 0.70 -0.0
1,416,792 - Dsui_1362 0.76 +0.2
1,416,862 - +0.4
1,416,873 - +0.4
1,416,997 + Dsui_1363 0.19 -2.1
1,417,018 - Dsui_1363 0.23 +0.3
1,417,018 - Dsui_1363 0.23 -0.1
1,417,044 - Dsui_1363 0.28 -0.6
1,417,095 - Dsui_1363 0.37 +0.1
1,417,158 - Dsui_1363 0.48 -0.4
1,417,198 + Dsui_1363 0.56 -2.3
1,417,212 - Dsui_1363 0.58 -0.1
1,417,219 + Dsui_1363 0.59 -0.5
1,417,266 - Dsui_1363 0.68 -0.2
1,417,299 + Dsui_1363 0.74 -1.8
1,417,313 + Dsui_1363 0.77 -0.5
1,417,321 - Dsui_1363 0.78 -0.2
1,417,321 - Dsui_1363 0.78 -0.3
1,417,321 - Dsui_1363 0.78 -0.3
1,417,403 - -0.2
1,417,468 + +1.5

Or see this region's nucleotide sequence