Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1360 and Dsui_1361 are separated by 184 nucleotides Dsui_1361 and Dsui_1362 are separated by 1 nucleotides Dsui_1362 and Dsui_1363 are separated by 12 nucleotides Dsui_1363 and Dsui_1364 are separated by 23 nucleotides
Dsui_1360: Dsui_1360 - hypothetical protein, at 1,414,266 to 1,415,540
_1360
Dsui_1361: Dsui_1361 - diguanylate cyclase (GGDEF) domain-containing protein, at 1,415,725 to 1,416,501
_1361
Dsui_1362: Dsui_1362 - protein of unknown function (DUF1987), at 1,416,503 to 1,416,880
_1362
Dsui_1363: Dsui_1363 - hypothetical protein, at 1,416,893 to 1,417,441
_1363
Dsui_1364: Dsui_1364 - serine phosphatase RsbU, regulator of sigma subunit, at 1,417,465 to 1,419,462
_1364
Position (kb)
1415
1416
1417 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1414.809 kb on - strand at 1414.819 kb on - strand, within Dsui_1360 at 1414.855 kb on - strand at 1414.884 kb on + strand, within Dsui_1360 at 1414.958 kb on + strand, within Dsui_1360 at 1415.001 kb on - strand at 1415.031 kb on + strand at 1415.076 kb on + strand, within Dsui_1360 at 1415.266 kb on + strand, within Dsui_1360 at 1415.302 kb on - strand, within Dsui_1360 at 1415.339 kb on + strand, within Dsui_1360 at 1415.339 kb on + strand at 1415.346 kb on + strand at 1415.353 kb on + strand, within Dsui_1360 at 1415.454 kb on - strand at 1415.456 kb on + strand at 1415.728 kb on + strand at 1415.728 kb on + strand at 1415.728 kb on + strand at 1415.736 kb on - strand at 1415.827 kb on + strand, within Dsui_1361 at 1415.832 kb on + strand, within Dsui_1361 at 1415.832 kb on + strand, within Dsui_1361 at 1416.135 kb on + strand, within Dsui_1361 at 1416.152 kb on + strand, within Dsui_1361 at 1416.160 kb on - strand, within Dsui_1361 at 1416.201 kb on + strand, within Dsui_1361 at 1416.214 kb on - strand, within Dsui_1361 at 1416.245 kb on + strand, within Dsui_1361 at 1416.245 kb on + strand, within Dsui_1361 at 1416.257 kb on + strand at 1416.285 kb on + strand, within Dsui_1361 at 1416.311 kb on + strand, within Dsui_1361 at 1416.319 kb on - strand, within Dsui_1361 at 1416.319 kb on - strand, within Dsui_1361 at 1416.319 kb on - strand, within Dsui_1361 at 1416.319 kb on - strand, within Dsui_1361 at 1416.351 kb on + strand, within Dsui_1361 at 1416.643 kb on + strand, within Dsui_1362 at 1416.651 kb on - strand, within Dsui_1362 at 1416.651 kb on - strand, within Dsui_1362 at 1416.651 kb on - strand, within Dsui_1362 at 1416.651 kb on - strand, within Dsui_1362 at 1416.723 kb on + strand, within Dsui_1362 at 1416.745 kb on - strand, within Dsui_1362 at 1416.758 kb on + strand, within Dsui_1362 at 1416.759 kb on + strand, within Dsui_1362 at 1416.767 kb on - strand, within Dsui_1362 at 1416.792 kb on - strand, within Dsui_1362 at 1416.862 kb on - strand at 1416.873 kb on - strand at 1416.997 kb on + strand, within Dsui_1363 at 1417.018 kb on - strand, within Dsui_1363 at 1417.018 kb on - strand, within Dsui_1363 at 1417.044 kb on - strand, within Dsui_1363 at 1417.095 kb on - strand, within Dsui_1363 at 1417.158 kb on - strand, within Dsui_1363 at 1417.198 kb on + strand, within Dsui_1363 at 1417.212 kb on - strand, within Dsui_1363 at 1417.219 kb on + strand, within Dsui_1363 at 1417.266 kb on - strand, within Dsui_1363 at 1417.299 kb on + strand, within Dsui_1363 at 1417.313 kb on + strand, within Dsui_1363 at 1417.321 kb on - strand, within Dsui_1363 at 1417.321 kb on - strand, within Dsui_1363 at 1417.321 kb on - strand, within Dsui_1363 at 1417.403 kb on - strand at 1417.468 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 1,414,809 - +0.5 1,414,819 - Dsui_1360 0.43 -1.8 1,414,855 - +0.5 1,414,884 + Dsui_1360 0.48 -0.5 1,414,958 + Dsui_1360 0.54 -0.5 1,415,001 - -0.5 1,415,031 + -1.1 1,415,076 + Dsui_1360 0.64 -1.5 1,415,266 + Dsui_1360 0.78 +0.5 1,415,302 - Dsui_1360 0.81 +0.5 1,415,339 + Dsui_1360 0.84 -0.5 1,415,339 + +0.5 1,415,346 + +0.5 1,415,353 + Dsui_1360 0.85 -1.5 1,415,454 - +0.5 1,415,456 + +1.1 1,415,728 + -0.5 1,415,728 + -1.5 1,415,728 + -1.8 1,415,736 - +1.0 1,415,827 + Dsui_1361 0.13 -2.1 1,415,832 + Dsui_1361 0.14 -0.7 1,415,832 + Dsui_1361 0.14 +0.9 1,416,135 + Dsui_1361 0.53 -3.4 1,416,152 + Dsui_1361 0.55 +0.5 1,416,160 - Dsui_1361 0.56 -0.5 1,416,201 + Dsui_1361 0.61 -1.1 1,416,214 - Dsui_1361 0.63 -0.3 1,416,245 + Dsui_1361 0.67 -1.5 1,416,245 + Dsui_1361 0.67 -0.5 1,416,257 + +0.5 1,416,285 + Dsui_1361 0.72 -1.8 1,416,311 + Dsui_1361 0.75 +0.5 1,416,319 - Dsui_1361 0.76 +0.2 1,416,319 - Dsui_1361 0.76 -0.9 1,416,319 - Dsui_1361 0.76 -0.6 1,416,319 - Dsui_1361 0.76 -0.6 1,416,351 + Dsui_1361 0.81 -0.5 1,416,643 + Dsui_1362 0.37 -0.5 1,416,651 - Dsui_1362 0.39 -0.4 1,416,651 - Dsui_1362 0.39 +0.3 1,416,651 - Dsui_1362 0.39 -0.0 1,416,651 - Dsui_1362 0.39 -0.6 1,416,723 + Dsui_1362 0.58 -0.5 1,416,745 - Dsui_1362 0.64 +0.3 1,416,758 + Dsui_1362 0.67 -0.5 1,416,759 + Dsui_1362 0.68 +0.5 1,416,767 - Dsui_1362 0.70 -0.0 1,416,792 - Dsui_1362 0.76 +0.2 1,416,862 - +0.4 1,416,873 - +0.4 1,416,997 + Dsui_1363 0.19 -2.1 1,417,018 - Dsui_1363 0.23 +0.3 1,417,018 - Dsui_1363 0.23 -0.1 1,417,044 - Dsui_1363 0.28 -0.6 1,417,095 - Dsui_1363 0.37 +0.1 1,417,158 - Dsui_1363 0.48 -0.4 1,417,198 + Dsui_1363 0.56 -2.3 1,417,212 - Dsui_1363 0.58 -0.1 1,417,219 + Dsui_1363 0.59 -0.5 1,417,266 - Dsui_1363 0.68 -0.2 1,417,299 + Dsui_1363 0.74 -1.8 1,417,313 + Dsui_1363 0.77 -0.5 1,417,321 - Dsui_1363 0.78 -0.2 1,417,321 - Dsui_1363 0.78 -0.3 1,417,321 - Dsui_1363 0.78 -0.3 1,417,403 - -0.2 1,417,468 + +1.5
Or see this region's nucleotide sequence