Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1354 and Dsui_1355 are separated by 177 nucleotides Dsui_1355 and Dsui_1356 overlap by 109 nucleotides Dsui_1356 and Dsui_1357 are separated by 30 nucleotides Dsui_1357 and Dsui_1358 are separated by 42 nucleotides
Dsui_1354: Dsui_1354 - transcriptional regulator with HTH domain and aminotransferase domain, at 1,409,814 to 1,411,253
_1354
Dsui_1355: Dsui_1355 - hypothetical protein, at 1,411,431 to 1,411,871
_1355
Dsui_1356: Dsui_1356 - hypothetical protein, at 1,411,763 to 1,412,128
_1356
Dsui_1357: Dsui_1357 - hypothetical protein, at 1,412,159 to 1,412,290
_1357
Dsui_1358: Dsui_1358 - metalloendopeptidase-like membrane protein, at 1,412,333 to 1,413,148
_1358
Position (kb)
1411
1412
1413 Strain fitness (log2 ratio)
-2
-1
0
1 at 1410.860 kb on - strand, within Dsui_1354 at 1410.883 kb on - strand, within Dsui_1354 at 1411.124 kb on + strand at 1411.132 kb on - strand at 1411.243 kb on - strand at 1411.256 kb on - strand at 1411.295 kb on - strand at 1411.319 kb on - strand at 1411.386 kb on - strand at 1411.395 kb on + strand at 1411.582 kb on - strand, within Dsui_1355 at 1411.634 kb on + strand, within Dsui_1355 at 1411.713 kb on - strand at 1411.750 kb on - strand at 1411.930 kb on - strand at 1411.982 kb on + strand, within Dsui_1356 at 1411.990 kb on - strand at 1412.054 kb on - strand, within Dsui_1356 at 1412.131 kb on - strand at 1412.149 kb on + strand at 1412.157 kb on - strand at 1412.216 kb on + strand, within Dsui_1357 at 1412.239 kb on + strand, within Dsui_1357 at 1412.253 kb on - strand, within Dsui_1357 at 1412.284 kb on + strand at 1412.296 kb on + strand at 1412.374 kb on + strand at 1412.397 kb on + strand at 1412.397 kb on + strand at 1412.407 kb on + strand at 1412.423 kb on - strand, within Dsui_1358 at 1412.469 kb on - strand at 1412.509 kb on - strand, within Dsui_1358 at 1412.594 kb on - strand, within Dsui_1358 at 1412.852 kb on - strand, within Dsui_1358 at 1412.852 kb on - strand, within Dsui_1358 at 1412.867 kb on - strand, within Dsui_1358 at 1412.886 kb on - strand, within Dsui_1358
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 1,410,860 - Dsui_1354 0.73 +0.1 1,410,883 - Dsui_1354 0.74 -0.2 1,411,124 + +0.5 1,411,132 - -1.7 1,411,243 - +0.5 1,411,256 - -0.1 1,411,295 - -0.5 1,411,319 - -1.1 1,411,386 - -1.5 1,411,395 + -1.1 1,411,582 - Dsui_1355 0.34 -0.5 1,411,634 + Dsui_1355 0.46 -1.1 1,411,713 - +0.5 1,411,750 - -0.5 1,411,930 - +0.5 1,411,982 + Dsui_1356 0.60 -0.5 1,411,990 - +0.5 1,412,054 - Dsui_1356 0.80 -2.3 1,412,131 - -0.5 1,412,149 + -0.0 1,412,157 - +0.5 1,412,216 + Dsui_1357 0.43 -0.3 1,412,239 + Dsui_1357 0.61 -0.3 1,412,253 - Dsui_1357 0.71 -1.1 1,412,284 + -0.8 1,412,296 + -0.3 1,412,374 + -1.1 1,412,397 + -1.5 1,412,397 + -2.1 1,412,407 + -0.8 1,412,423 - Dsui_1358 0.11 -1.5 1,412,469 - -0.1 1,412,509 - Dsui_1358 0.22 +0.0 1,412,594 - Dsui_1358 0.32 -0.4 1,412,852 - Dsui_1358 0.64 +0.8 1,412,852 - Dsui_1358 0.64 +0.1 1,412,867 - Dsui_1358 0.65 +0.2 1,412,886 - Dsui_1358 0.68 +0.5
Or see this region's nucleotide sequence