Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1324 and Dsui_1325 are separated by 159 nucleotides Dsui_1325 and Dsui_1326 are separated by 54 nucleotides Dsui_1326 and Dsui_1327 are separated by 119 nucleotides Dsui_1327 and Dsui_1328 are separated by 21 nucleotides
Dsui_1324: Dsui_1324 - prolyl-tRNA synthetase, family II, at 1,383,669 to 1,385,381
_1324
Dsui_1325: Dsui_1325 - ADP-ribose pyrophosphatase, at 1,385,541 to 1,386,065
_1325
Dsui_1326: Dsui_1326 - putative signal-transduction protein containing cAMP-binding and CBS domains, at 1,386,120 to 1,386,731
_1326
Dsui_1327: Dsui_1327 - CNP1-like family, at 1,386,851 to 1,387,348
_1327
Dsui_1328: Dsui_1328 - ubiquinone biosynthesis protein COQ7, at 1,387,370 to 1,387,993
_1328
Position (kb)
1386
1387 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1385.442 kb on - strand at 1385.442 kb on - strand at 1385.541 kb on - strand at 1385.556 kb on + strand at 1385.645 kb on + strand, within Dsui_1325 at 1385.653 kb on - strand, within Dsui_1325 at 1385.656 kb on + strand, within Dsui_1325 at 1385.719 kb on - strand, within Dsui_1325 at 1385.894 kb on + strand, within Dsui_1325 at 1385.973 kb on - strand, within Dsui_1325 at 1386.009 kb on - strand, within Dsui_1325 at 1386.031 kb on + strand at 1386.031 kb on + strand at 1386.084 kb on + strand at 1386.084 kb on + strand at 1386.084 kb on + strand at 1386.092 kb on - strand at 1386.111 kb on - strand at 1386.112 kb on - strand at 1386.137 kb on + strand at 1386.137 kb on + strand at 1386.178 kb on + strand at 1386.215 kb on - strand, within Dsui_1326 at 1386.218 kb on + strand, within Dsui_1326 at 1386.218 kb on + strand, within Dsui_1326 at 1386.220 kb on - strand, within Dsui_1326 at 1386.220 kb on - strand, within Dsui_1326 at 1386.223 kb on + strand, within Dsui_1326 at 1386.239 kb on + strand, within Dsui_1326 at 1386.247 kb on - strand, within Dsui_1326 at 1386.274 kb on + strand, within Dsui_1326 at 1386.274 kb on + strand, within Dsui_1326 at 1386.274 kb on + strand, within Dsui_1326 at 1386.293 kb on + strand, within Dsui_1326 at 1386.305 kb on - strand, within Dsui_1326 at 1386.305 kb on - strand, within Dsui_1326 at 1386.311 kb on + strand, within Dsui_1326 at 1386.311 kb on + strand, within Dsui_1326 at 1386.311 kb on + strand, within Dsui_1326 at 1386.319 kb on - strand, within Dsui_1326 at 1386.319 kb on - strand, within Dsui_1326 at 1386.319 kb on - strand, within Dsui_1326 at 1386.330 kb on + strand, within Dsui_1326 at 1386.393 kb on + strand, within Dsui_1326 at 1386.425 kb on + strand, within Dsui_1326 at 1386.425 kb on + strand, within Dsui_1326 at 1386.448 kb on - strand, within Dsui_1326 at 1386.482 kb on - strand at 1386.660 kb on + strand, within Dsui_1326 at 1386.660 kb on + strand, within Dsui_1326 at 1386.668 kb on - strand, within Dsui_1326 at 1386.668 kb on - strand, within Dsui_1326 at 1386.678 kb on - strand at 1386.678 kb on - strand at 1386.678 kb on - strand at 1386.681 kb on + strand at 1386.741 kb on + strand at 1386.755 kb on + strand at 1386.760 kb on + strand at 1386.765 kb on + strand at 1386.766 kb on + strand at 1386.774 kb on - strand at 1386.821 kb on + strand at 1386.822 kb on + strand at 1386.829 kb on - strand at 1386.832 kb on + strand at 1386.842 kb on + strand at 1386.842 kb on - strand at 1386.848 kb on + strand at 1386.881 kb on + strand at 1386.881 kb on + strand at 1386.889 kb on - strand at 1386.893 kb on + strand at 1386.893 kb on + strand at 1386.893 kb on + strand at 1386.925 kb on + strand, within Dsui_1327 at 1386.937 kb on + strand, within Dsui_1327 at 1386.937 kb on + strand, within Dsui_1327 at 1386.967 kb on + strand, within Dsui_1327 at 1386.975 kb on - strand, within Dsui_1327 at 1386.991 kb on + strand, within Dsui_1327 at 1387.004 kb on + strand, within Dsui_1327 at 1387.004 kb on + strand, within Dsui_1327 at 1387.004 kb on + strand, within Dsui_1327 at 1387.013 kb on + strand, within Dsui_1327 at 1387.013 kb on - strand, within Dsui_1327 at 1387.013 kb on - strand, within Dsui_1327 at 1387.013 kb on - strand, within Dsui_1327 at 1387.013 kb on - strand, within Dsui_1327 at 1387.020 kb on + strand, within Dsui_1327 at 1387.047 kb on + strand, within Dsui_1327 at 1387.055 kb on - strand, within Dsui_1327 at 1387.085 kb on + strand, within Dsui_1327 at 1387.093 kb on - strand, within Dsui_1327 at 1387.110 kb on + strand, within Dsui_1327 at 1387.118 kb on + strand, within Dsui_1327 at 1387.126 kb on - strand, within Dsui_1327 at 1387.150 kb on - strand, within Dsui_1327 at 1387.169 kb on + strand, within Dsui_1327 at 1387.169 kb on + strand, within Dsui_1327 at 1387.177 kb on - strand, within Dsui_1327 at 1387.179 kb on + strand, within Dsui_1327 at 1387.186 kb on + strand, within Dsui_1327 at 1387.191 kb on + strand, within Dsui_1327 at 1387.199 kb on - strand, within Dsui_1327 at 1387.199 kb on - strand, within Dsui_1327 at 1387.204 kb on - strand, within Dsui_1327 at 1387.214 kb on - strand, within Dsui_1327 at 1387.219 kb on - strand, within Dsui_1327 at 1387.224 kb on - strand, within Dsui_1327 at 1387.292 kb on + strand, within Dsui_1327 at 1387.292 kb on + strand, within Dsui_1327 at 1387.292 kb on + strand, within Dsui_1327 at 1387.292 kb on + strand, within Dsui_1327 at 1387.292 kb on + strand, within Dsui_1327 at 1387.295 kb on - strand, within Dsui_1327 at 1387.298 kb on - strand, within Dsui_1327 at 1387.300 kb on - strand at 1387.300 kb on - strand at 1387.300 kb on - strand at 1387.300 kb on - strand at 1387.300 kb on - strand at 1387.300 kb on - strand at 1387.300 kb on - strand at 1387.300 kb on - strand at 1387.319 kb on - strand at 1387.326 kb on + strand at 1387.348 kb on + strand at 1387.355 kb on + strand at 1387.360 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 1,385,442 - +0.4 1,385,442 - +0.4 1,385,541 - +0.4 1,385,556 + +4.7 1,385,645 + Dsui_1325 0.20 +4.0 1,385,653 - Dsui_1325 0.21 +0.4 1,385,656 + Dsui_1325 0.22 +2.5 1,385,719 - Dsui_1325 0.34 -0.6 1,385,894 + Dsui_1325 0.67 +2.4 1,385,973 - Dsui_1325 0.82 -1.1 1,386,009 - Dsui_1325 0.89 -0.6 1,386,031 + +1.2 1,386,031 + +0.2 1,386,084 + +0.7 1,386,084 + +0.2 1,386,084 + +0.1 1,386,092 - -0.6 1,386,111 - +0.4 1,386,112 - -1.1 1,386,137 + +1.0 1,386,137 + +0.9 1,386,178 + -0.1 1,386,215 - Dsui_1326 0.16 -1.6 1,386,218 + Dsui_1326 0.16 +0.9 1,386,218 + Dsui_1326 0.16 +0.4 1,386,220 - Dsui_1326 0.16 -0.6 1,386,220 - Dsui_1326 0.16 +0.4 1,386,223 + Dsui_1326 0.17 +0.2 1,386,239 + Dsui_1326 0.19 +0.2 1,386,247 - Dsui_1326 0.21 +0.4 1,386,274 + Dsui_1326 0.25 +0.2 1,386,274 + Dsui_1326 0.25 +0.4 1,386,274 + Dsui_1326 0.25 +0.2 1,386,293 + Dsui_1326 0.28 +0.2 1,386,305 - Dsui_1326 0.30 -1.1 1,386,305 - Dsui_1326 0.30 -1.1 1,386,311 + Dsui_1326 0.31 +0.4 1,386,311 + Dsui_1326 0.31 +0.0 1,386,311 + Dsui_1326 0.31 +0.0 1,386,319 - Dsui_1326 0.33 -0.6 1,386,319 - Dsui_1326 0.33 +0.4 1,386,319 - Dsui_1326 0.33 -0.6 1,386,330 + Dsui_1326 0.34 -3.5 1,386,393 + Dsui_1326 0.45 -0.1 1,386,425 + Dsui_1326 0.50 -0.1 1,386,425 + Dsui_1326 0.50 -0.4 1,386,448 - Dsui_1326 0.54 -2.4 1,386,482 - +0.4 1,386,660 + Dsui_1326 0.88 +0.4 1,386,660 + Dsui_1326 0.88 -0.3 1,386,668 - Dsui_1326 0.90 -1.1 1,386,668 - Dsui_1326 0.90 -0.6 1,386,678 - -0.6 1,386,678 - +0.4 1,386,678 - -0.1 1,386,681 + -0.4 1,386,741 + +0.1 1,386,755 + +0.9 1,386,760 + +0.4 1,386,765 + -0.6 1,386,766 + +0.1 1,386,774 - +0.4 1,386,821 + -0.1 1,386,822 + +0.1 1,386,829 - +0.4 1,386,832 + -0.6 1,386,842 + -0.7 1,386,842 - +0.4 1,386,848 + -0.7 1,386,881 + -0.1 1,386,881 + -0.9 1,386,889 - +0.4 1,386,893 + -0.7 1,386,893 + -0.1 1,386,893 + -0.8 1,386,925 + Dsui_1327 0.15 -1.0 1,386,937 + Dsui_1327 0.17 -0.9 1,386,937 + Dsui_1327 0.17 -0.5 1,386,967 + Dsui_1327 0.23 -0.5 1,386,975 - Dsui_1327 0.25 -0.6 1,386,991 + Dsui_1327 0.28 -0.6 1,387,004 + Dsui_1327 0.31 -0.5 1,387,004 + Dsui_1327 0.31 -0.1 1,387,004 + Dsui_1327 0.31 -0.5 1,387,013 + Dsui_1327 0.33 -0.7 1,387,013 - Dsui_1327 0.33 -1.9 1,387,013 - Dsui_1327 0.33 -1.1 1,387,013 - Dsui_1327 0.33 +0.4 1,387,013 - Dsui_1327 0.33 -0.6 1,387,020 + Dsui_1327 0.34 -0.3 1,387,047 + Dsui_1327 0.39 +0.7 1,387,055 - Dsui_1327 0.41 +0.4 1,387,085 + Dsui_1327 0.47 -0.8 1,387,093 - Dsui_1327 0.49 -1.1 1,387,110 + Dsui_1327 0.52 +0.1 1,387,118 + Dsui_1327 0.54 -1.1 1,387,126 - Dsui_1327 0.55 -2.6 1,387,150 - Dsui_1327 0.60 -0.6 1,387,169 + Dsui_1327 0.64 -0.7 1,387,169 + Dsui_1327 0.64 -1.2 1,387,177 - Dsui_1327 0.65 +0.4 1,387,179 + Dsui_1327 0.66 -0.8 1,387,186 + Dsui_1327 0.67 -1.1 1,387,191 + Dsui_1327 0.68 -1.0 1,387,199 - Dsui_1327 0.70 +0.4 1,387,199 - Dsui_1327 0.70 -1.6 1,387,204 - Dsui_1327 0.71 -0.6 1,387,214 - Dsui_1327 0.73 +0.4 1,387,219 - Dsui_1327 0.74 +0.4 1,387,224 - Dsui_1327 0.75 +0.4 1,387,292 + Dsui_1327 0.89 -0.6 1,387,292 + Dsui_1327 0.89 -0.7 1,387,292 + Dsui_1327 0.89 -1.0 1,387,292 + Dsui_1327 0.89 -0.1 1,387,292 + Dsui_1327 0.89 -1.0 1,387,295 - Dsui_1327 0.89 +0.4 1,387,298 - Dsui_1327 0.90 -2.1 1,387,300 - -0.6 1,387,300 - -1.6 1,387,300 - -1.9 1,387,300 - -2.6 1,387,300 - +0.4 1,387,300 - -0.6 1,387,300 - -0.6 1,387,300 - +0.4 1,387,319 - -0.6 1,387,326 + -0.5 1,387,348 + +0.1 1,387,355 + -0.8 1,387,360 + +0.4
Or see this region's nucleotide sequence