Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1272 and Dsui_1273 are separated by 75 nucleotides Dsui_1273 and Dsui_1274 are separated by 10 nucleotides Dsui_1274 and Dsui_1275 are separated by 36 nucleotides Dsui_1275 and Dsui_1276 are separated by 25 nucleotides Dsui_1276 and Dsui_1277 are separated by 14 nucleotides
Dsui_1272: Dsui_1272 - putative transcriptional regulator, at 1,336,183 to 1,336,509
_1272
Dsui_1273: Dsui_1273 - Rhodanese-related sulfurtransferase, at 1,336,585 to 1,336,998
_1273
Dsui_1274: Dsui_1274 - Glutaredoxin, GrxC family, at 1,337,009 to 1,337,275
_1274
Dsui_1275: Dsui_1275 - protein-export chaperone SecB, at 1,337,312 to 1,337,776
_1275
Dsui_1276: Dsui_1276 - hypothetical protein, at 1,337,802 to 1,338,275
_1276
Dsui_1277: Dsui_1277 - glycerol-3-phosphate dehydrogenase, at 1,338,290 to 1,339,285
_1277
Position (kb)
1337
1338 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1336.337 kb on - strand at 1336.367 kb on - strand at 1336.377 kb on + strand, within Dsui_1272 at 1336.429 kb on - strand, within Dsui_1272 at 1336.445 kb on + strand, within Dsui_1272 at 1336.445 kb on + strand, within Dsui_1272 at 1336.445 kb on + strand, within Dsui_1272 at 1336.476 kb on + strand, within Dsui_1272 at 1336.484 kb on - strand at 1336.497 kb on - strand at 1336.497 kb on - strand at 1336.515 kb on + strand at 1336.523 kb on - strand at 1336.523 kb on - strand at 1336.523 kb on - strand at 1336.642 kb on + strand, within Dsui_1273 at 1336.697 kb on + strand, within Dsui_1273 at 1336.700 kb on + strand, within Dsui_1273 at 1336.980 kb on + strand at 1336.992 kb on + strand at 1336.992 kb on + strand at 1336.992 kb on + strand at 1336.992 kb on + strand at 1336.994 kb on + strand at 1337.023 kb on + strand at 1337.077 kb on + strand, within Dsui_1274 at 1337.077 kb on + strand, within Dsui_1274 at 1337.104 kb on + strand, within Dsui_1274 at 1337.163 kb on + strand, within Dsui_1274 at 1337.208 kb on + strand, within Dsui_1274 at 1337.225 kb on + strand, within Dsui_1274 at 1337.405 kb on + strand, within Dsui_1275 at 1337.603 kb on + strand, within Dsui_1275 at 1337.673 kb on + strand, within Dsui_1275 at 1337.794 kb on + strand at 1338.019 kb on + strand, within Dsui_1276 at 1338.050 kb on + strand, within Dsui_1276 at 1338.050 kb on + strand, within Dsui_1276 at 1338.174 kb on + strand, within Dsui_1276 at 1338.195 kb on + strand, within Dsui_1276 at 1338.276 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 1,336,337 - +0.4 1,336,367 - -1.1 1,336,377 + Dsui_1272 0.59 -0.2 1,336,429 - Dsui_1272 0.75 -0.6 1,336,445 + Dsui_1272 0.80 -0.4 1,336,445 + Dsui_1272 0.80 -0.4 1,336,445 + Dsui_1272 0.80 -0.5 1,336,476 + Dsui_1272 0.90 -0.8 1,336,484 - +0.4 1,336,497 - +0.4 1,336,497 - +0.4 1,336,515 + -0.4 1,336,523 - -2.9 1,336,523 - -1.1 1,336,523 - +0.4 1,336,642 + Dsui_1273 0.14 +1.2 1,336,697 + Dsui_1273 0.27 -1.0 1,336,700 + Dsui_1273 0.28 +0.8 1,336,980 + +1.0 1,336,992 + +0.4 1,336,992 + +0.6 1,336,992 + +0.4 1,336,992 + +0.6 1,336,994 + +0.9 1,337,023 + +0.3 1,337,077 + Dsui_1274 0.25 +0.7 1,337,077 + Dsui_1274 0.25 +0.5 1,337,104 + Dsui_1274 0.36 +0.6 1,337,163 + Dsui_1274 0.58 +0.6 1,337,208 + Dsui_1274 0.75 +0.3 1,337,225 + Dsui_1274 0.81 +0.3 1,337,405 + Dsui_1275 0.20 -2.1 1,337,603 + Dsui_1275 0.63 -4.9 1,337,673 + Dsui_1275 0.78 -2.1 1,337,794 + -0.4 1,338,019 + Dsui_1276 0.46 +0.7 1,338,050 + Dsui_1276 0.52 -0.3 1,338,050 + Dsui_1276 0.52 +0.8 1,338,174 + Dsui_1276 0.78 -0.3 1,338,195 + Dsui_1276 0.83 -0.2 1,338,276 + +0.1
Or see this region's nucleotide sequence