Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1183 and Dsui_1184 are separated by 120 nucleotides Dsui_1184 and Dsui_1185 are separated by 39 nucleotides Dsui_1185 and Dsui_1186 are separated by 12 nucleotides Dsui_1186 and Dsui_1187 are separated by 162 nucleotides
Dsui_1183: Dsui_1183 - hypothetical protein, at 1,236,859 to 1,237,032
_1183
Dsui_1184: Dsui_1184 - iron donor protein CyaY, at 1,237,153 to 1,237,470
_1184
Dsui_1185: Dsui_1185 - hypothetical protein involved in intracellular sulfur reduction, at 1,237,510 to 1,237,866
_1185
Dsui_1186: Dsui_1186 - penicillin-binding protein, 1A family, at 1,237,879 to 1,240,194
_1186
Dsui_1187: Dsui_1187 - type IV pilus assembly protein PilM, at 1,240,357 to 1,241,436
_1187
Position (kb)
1237
1238
1239
1240
1241 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1237.078 kb on - strand at 1237.104 kb on + strand at 1237.112 kb on - strand at 1237.116 kb on + strand at 1237.123 kb on - strand at 1237.124 kb on - strand at 1237.124 kb on - strand at 1237.124 kb on - strand at 1237.462 kb on - strand at 1237.493 kb on - strand at 1237.517 kb on + strand at 1237.525 kb on - strand at 1237.541 kb on - strand at 1237.552 kb on - strand, within Dsui_1185 at 1237.615 kb on - strand, within Dsui_1185 at 1237.615 kb on - strand, within Dsui_1185 at 1237.615 kb on - strand, within Dsui_1185 at 1237.852 kb on + strand at 1237.962 kb on - strand at 1237.970 kb on + strand at 1237.970 kb on + strand at 1237.992 kb on + strand at 1240.198 kb on - strand at 1240.260 kb on + strand at 1240.268 kb on + strand at 1240.268 kb on + strand at 1240.276 kb on - strand at 1240.406 kb on + strand at 1240.406 kb on + strand at 1240.410 kb on + strand at 1240.413 kb on - strand at 1240.414 kb on - strand at 1240.444 kb on + strand at 1240.495 kb on - strand, within Dsui_1187 at 1240.508 kb on - strand, within Dsui_1187 at 1240.510 kb on - strand, within Dsui_1187 at 1240.603 kb on + strand, within Dsui_1187 at 1240.626 kb on + strand, within Dsui_1187 at 1240.686 kb on + strand, within Dsui_1187 at 1240.834 kb on + strand, within Dsui_1187 at 1240.881 kb on + strand, within Dsui_1187 at 1240.881 kb on + strand, within Dsui_1187 at 1240.889 kb on - strand, within Dsui_1187 at 1240.889 kb on - strand, within Dsui_1187 at 1240.901 kb on + strand, within Dsui_1187 at 1240.937 kb on + strand, within Dsui_1187 at 1240.941 kb on + strand, within Dsui_1187 at 1241.013 kb on + strand, within Dsui_1187 at 1241.021 kb on + strand, within Dsui_1187 at 1241.094 kb on + strand, within Dsui_1187 at 1241.102 kb on - strand, within Dsui_1187 at 1241.112 kb on - strand, within Dsui_1187 at 1241.156 kb on - strand, within Dsui_1187 at 1241.168 kb on + strand, within Dsui_1187 at 1241.168 kb on + strand, within Dsui_1187 at 1241.176 kb on - strand, within Dsui_1187
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 1,237,078 - -0.4 1,237,104 + +0.3 1,237,112 - -3.7 1,237,116 + -0.2 1,237,123 - -1.1 1,237,124 - -0.5 1,237,124 - -0.4 1,237,124 - -1.1 1,237,462 - +1.2 1,237,493 - -0.9 1,237,517 + +1.7 1,237,525 - +1.1 1,237,541 - +0.0 1,237,552 - Dsui_1185 0.12 -0.4 1,237,615 - Dsui_1185 0.29 -0.4 1,237,615 - Dsui_1185 0.29 -0.4 1,237,615 - Dsui_1185 0.29 +0.2 1,237,852 + -1.8 1,237,962 - -0.0 1,237,970 + -1.5 1,237,970 + +0.0 1,237,992 + +0.5 1,240,198 - +0.7 1,240,260 + -1.1 1,240,268 + -1.1 1,240,268 + -2.1 1,240,276 - +0.4 1,240,406 + -0.5 1,240,406 + -1.4 1,240,410 + -0.6 1,240,413 - -2.9 1,240,414 - +0.4 1,240,444 + -1.4 1,240,495 - Dsui_1187 0.13 -2.1 1,240,508 - Dsui_1187 0.14 -0.6 1,240,510 - Dsui_1187 0.14 -1.7 1,240,603 + Dsui_1187 0.23 -0.2 1,240,626 + Dsui_1187 0.25 -1.3 1,240,686 + Dsui_1187 0.30 -1.4 1,240,834 + Dsui_1187 0.44 -1.4 1,240,881 + Dsui_1187 0.49 -0.8 1,240,881 + Dsui_1187 0.49 -0.8 1,240,889 - Dsui_1187 0.49 -0.6 1,240,889 - Dsui_1187 0.49 -3.0 1,240,901 + Dsui_1187 0.50 -2.4 1,240,937 + Dsui_1187 0.54 -1.3 1,240,941 + Dsui_1187 0.54 -1.2 1,241,013 + Dsui_1187 0.61 -1.5 1,241,021 + Dsui_1187 0.61 -1.4 1,241,094 + Dsui_1187 0.68 -1.9 1,241,102 - Dsui_1187 0.69 +0.4 1,241,112 - Dsui_1187 0.70 +0.4 1,241,156 - Dsui_1187 0.74 -1.9 1,241,168 + Dsui_1187 0.75 -1.4 1,241,168 + Dsui_1187 0.75 -0.6 1,241,176 - Dsui_1187 0.76 +0.4
Or see this region's nucleotide sequence