Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1106 and Dsui_1107 are separated by 38 nucleotides Dsui_1107 and Dsui_1108 are separated by 254 nucleotides
Dsui_1106: Dsui_1106 - nitroreductase, at 1,152,290 to 1,152,982
_1106
Dsui_1107: Dsui_1107 - cAMP-binding protein, at 1,153,021 to 1,153,695
_1107
Dsui_1108: Dsui_1108 - AMP-forming long-chain acyl-CoA synthetase, at 1,153,950 to 1,155,929
_1108
Position (kb)
1153
1154 Strain fitness (log2 ratio)
-2
-1
0
1 at 1152.030 kb on + strand at 1152.032 kb on - strand at 1152.043 kb on - strand at 1152.058 kb on + strand at 1152.142 kb on + strand at 1152.173 kb on - strand at 1152.179 kb on - strand at 1152.212 kb on + strand at 1152.371 kb on + strand, within Dsui_1106 at 1152.371 kb on + strand at 1152.376 kb on + strand, within Dsui_1106 at 1152.379 kb on - strand, within Dsui_1106 at 1152.379 kb on - strand, within Dsui_1106 at 1152.379 kb on - strand, within Dsui_1106 at 1152.379 kb on - strand, within Dsui_1106 at 1152.496 kb on + strand, within Dsui_1106 at 1152.496 kb on + strand, within Dsui_1106 at 1152.566 kb on + strand, within Dsui_1106 at 1152.754 kb on + strand, within Dsui_1106 at 1152.838 kb on + strand, within Dsui_1106 at 1152.883 kb on + strand, within Dsui_1106 at 1153.088 kb on + strand at 1153.122 kb on - strand, within Dsui_1107 at 1153.234 kb on + strand, within Dsui_1107 at 1153.290 kb on + strand, within Dsui_1107 at 1153.335 kb on - strand, within Dsui_1107 at 1153.553 kb on + strand, within Dsui_1107 at 1153.674 kb on - strand at 1153.803 kb on + strand at 1153.807 kb on - strand at 1153.807 kb on - strand at 1153.984 kb on + strand at 1153.984 kb on + strand at 1154.036 kb on + strand at 1154.088 kb on + strand at 1154.096 kb on - strand at 1154.231 kb on - strand, within Dsui_1108 at 1154.251 kb on + strand, within Dsui_1108 at 1154.332 kb on + strand, within Dsui_1108 at 1154.539 kb on + strand, within Dsui_1108 at 1154.539 kb on + strand, within Dsui_1108 at 1154.573 kb on + strand, within Dsui_1108 at 1154.573 kb on + strand, within Dsui_1108 at 1154.581 kb on - strand, within Dsui_1108 at 1154.676 kb on + strand, within Dsui_1108
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 1,152,030 + -1.9 1,152,032 - -1.5 1,152,043 - +0.5 1,152,058 + +0.5 1,152,142 + -1.1 1,152,173 - +0.5 1,152,179 - -2.1 1,152,212 + -0.5 1,152,371 + Dsui_1106 0.12 -1.1 1,152,371 + +0.5 1,152,376 + Dsui_1106 0.12 -0.5 1,152,379 - Dsui_1106 0.13 +0.0 1,152,379 - Dsui_1106 0.13 -1.0 1,152,379 - Dsui_1106 0.13 -0.0 1,152,379 - Dsui_1106 0.13 +0.5 1,152,496 + Dsui_1106 0.30 +0.5 1,152,496 + Dsui_1106 0.30 +0.5 1,152,566 + Dsui_1106 0.40 -1.8 1,152,754 + Dsui_1106 0.67 -0.5 1,152,838 + Dsui_1106 0.79 -0.5 1,152,883 + Dsui_1106 0.86 -0.5 1,153,088 + +0.5 1,153,122 - Dsui_1107 0.15 +0.6 1,153,234 + Dsui_1107 0.32 +0.5 1,153,290 + Dsui_1107 0.40 -0.5 1,153,335 - Dsui_1107 0.47 +0.1 1,153,553 + Dsui_1107 0.79 +0.5 1,153,674 - -1.1 1,153,803 + +0.5 1,153,807 - -0.5 1,153,807 - +0.5 1,153,984 + -2.0 1,153,984 + -1.5 1,154,036 + -1.8 1,154,088 + +0.5 1,154,096 - -1.1 1,154,231 - Dsui_1108 0.14 -1.1 1,154,251 + Dsui_1108 0.15 +0.5 1,154,332 + Dsui_1108 0.19 -0.5 1,154,539 + Dsui_1108 0.30 +0.5 1,154,539 + Dsui_1108 0.30 -2.1 1,154,573 + Dsui_1108 0.31 +0.5 1,154,573 + Dsui_1108 0.31 -0.5 1,154,581 - Dsui_1108 0.32 -1.1 1,154,676 + Dsui_1108 0.37 -0.5
Or see this region's nucleotide sequence