Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1007 and Dsui_1008 are separated by 63 nucleotides Dsui_1008 and Dsui_1009 are separated by 121 nucleotides
Dsui_1007: Dsui_1007 - arabinose efflux permease family protein, at 1,034,396 to 1,035,610
_1007
Dsui_1008: Dsui_1008 - Uncharacterized protein conserved in bacteria (DUF2242), at 1,035,674 to 1,036,201
_1008
Dsui_1009: Dsui_1009 - PAS domain S-box, at 1,036,323 to 1,040,168
_1009
Position (kb)
1035
1036
1037 Strain fitness (log2 ratio)
-2
-1
0
1 at 1034.707 kb on - strand, within Dsui_1007 at 1034.867 kb on - strand, within Dsui_1007 at 1034.912 kb on + strand, within Dsui_1007 at 1035.189 kb on - strand, within Dsui_1007 at 1035.219 kb on - strand, within Dsui_1007 at 1035.244 kb on - strand, within Dsui_1007 at 1035.282 kb on + strand, within Dsui_1007 at 1035.308 kb on + strand, within Dsui_1007 at 1035.308 kb on + strand, within Dsui_1007 at 1035.341 kb on + strand, within Dsui_1007 at 1035.426 kb on + strand, within Dsui_1007 at 1035.488 kb on - strand, within Dsui_1007 at 1035.612 kb on - strand at 1035.797 kb on - strand, within Dsui_1008 at 1035.894 kb on + strand, within Dsui_1008 at 1035.965 kb on - strand, within Dsui_1008 at 1036.016 kb on - strand, within Dsui_1008 at 1036.094 kb on - strand, within Dsui_1008 at 1036.159 kb on + strand at 1036.165 kb on + strand at 1036.169 kb on + strand at 1036.169 kb on + strand at 1036.174 kb on + strand at 1036.182 kb on - strand at 1036.320 kb on + strand at 1036.320 kb on + strand at 1036.333 kb on - strand at 1036.349 kb on + strand at 1036.357 kb on - strand at 1036.537 kb on - strand at 1036.617 kb on - strand at 1036.691 kb on - strand at 1036.750 kb on - strand, within Dsui_1009 at 1036.750 kb on - strand, within Dsui_1009 at 1036.796 kb on - strand, within Dsui_1009 at 1036.912 kb on - strand, within Dsui_1009 at 1037.025 kb on - strand, within Dsui_1009 at 1037.113 kb on - strand, within Dsui_1009 at 1037.129 kb on + strand, within Dsui_1009 at 1037.137 kb on - strand, within Dsui_1009 at 1037.138 kb on - strand at 1037.143 kb on + strand, within Dsui_1009 at 1037.177 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 1,034,707 - Dsui_1007 0.26 -1.4 1,034,867 - Dsui_1007 0.39 -1.4 1,034,912 + Dsui_1007 0.42 -0.4 1,035,189 - Dsui_1007 0.65 -1.0 1,035,219 - Dsui_1007 0.68 -1.0 1,035,244 - Dsui_1007 0.70 +0.6 1,035,282 + Dsui_1007 0.73 -0.1 1,035,308 + Dsui_1007 0.75 -0.2 1,035,308 + Dsui_1007 0.75 +1.0 1,035,341 + Dsui_1007 0.78 -0.2 1,035,426 + Dsui_1007 0.85 -1.1 1,035,488 - Dsui_1007 0.90 -2.6 1,035,612 - +0.6 1,035,797 - Dsui_1008 0.23 -2.2 1,035,894 + Dsui_1008 0.42 +0.6 1,035,965 - Dsui_1008 0.55 -1.0 1,036,016 - Dsui_1008 0.65 -0.9 1,036,094 - Dsui_1008 0.80 -0.9 1,036,159 + -0.4 1,036,165 + +0.6 1,036,169 + +0.6 1,036,169 + +0.6 1,036,174 + -1.0 1,036,182 - +0.3 1,036,320 + -1.7 1,036,320 + -0.4 1,036,333 - +0.6 1,036,349 + +0.2 1,036,357 - -1.7 1,036,537 - -2.0 1,036,617 - +1.6 1,036,691 - +1.3 1,036,750 - Dsui_1009 0.11 +0.6 1,036,750 - Dsui_1009 0.11 -1.6 1,036,796 - Dsui_1009 0.12 +0.8 1,036,912 - Dsui_1009 0.15 -1.4 1,037,025 - Dsui_1009 0.18 +0.8 1,037,113 - Dsui_1009 0.21 +0.3 1,037,129 + Dsui_1009 0.21 -0.4 1,037,137 - Dsui_1009 0.21 -0.3 1,037,138 - +0.6 1,037,143 + Dsui_1009 0.21 -1.4 1,037,177 + -0.4
Or see this region's nucleotide sequence