Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0962 and Dsui_0963 are separated by 17 nucleotides Dsui_0963 and Dsui_0964 are separated by 1 nucleotides Dsui_0964 and Dsui_0965 are separated by 88 nucleotides
Dsui_0962: Dsui_0962 - collagenase-like protease, at 987,556 to 988,569
_0962
Dsui_0963: Dsui_0963 - collagenase-like protease, at 988,587 to 989,498
_0963
Dsui_0964: Dsui_0964 - putative lipid carrier protein, at 989,500 to 989,997
_0964
Dsui_0965: Dsui_0965 - putative membrane protein, at 990,086 to 990,778
_0965
Position (kb) 988
989
990 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 987.599 kb on + strand at 987.721 kb on + strand, within Dsui_0962 at 987.773 kb on + strand, within Dsui_0962 at 987.845 kb on + strand, within Dsui_0962 at 987.845 kb on + strand, within Dsui_0962 at 987.919 kb on + strand, within Dsui_0962 at 987.924 kb on + strand, within Dsui_0962 at 987.946 kb on - strand, within Dsui_0962 at 987.988 kb on + strand, within Dsui_0962 at 988.074 kb on + strand, within Dsui_0962 at 988.256 kb on + strand, within Dsui_0962 at 988.256 kb on + strand, within Dsui_0962 at 988.256 kb on + strand, within Dsui_0962 at 988.256 kb on + strand, within Dsui_0962 at 988.264 kb on - strand, within Dsui_0962 at 988.284 kb on + strand, within Dsui_0962 at 988.350 kb on - strand, within Dsui_0962 at 988.411 kb on - strand, within Dsui_0962 at 988.462 kb on - strand, within Dsui_0962 at 988.619 kb on - strand at 988.630 kb on - strand at 988.888 kb on - strand, within Dsui_0963 at 988.896 kb on - strand, within Dsui_0963 at 988.967 kb on - strand, within Dsui_0963 at 989.027 kb on + strand, within Dsui_0963 at 989.081 kb on - strand, within Dsui_0963 at 989.167 kb on - strand, within Dsui_0963 at 989.273 kb on + strand, within Dsui_0963 at 989.320 kb on + strand, within Dsui_0963 at 989.428 kb on - strand at 989.473 kb on + strand at 989.497 kb on + strand at 989.530 kb on - strand at 989.530 kb on - strand at 989.756 kb on + strand, within Dsui_0964 at 989.794 kb on - strand, within Dsui_0964 at 989.797 kb on + strand, within Dsui_0964 at 989.815 kb on - strand, within Dsui_0964 at 989.903 kb on - strand, within Dsui_0964 at 990.023 kb on - strand at 990.091 kb on - strand at 990.205 kb on + strand, within Dsui_0965 at 990.216 kb on + strand, within Dsui_0965 at 990.293 kb on + strand, within Dsui_0965 at 990.365 kb on + strand, within Dsui_0965 at 990.366 kb on + strand, within Dsui_0965 at 990.366 kb on + strand, within Dsui_0965 at 990.373 kb on - strand, within Dsui_0965 at 990.428 kb on - strand, within Dsui_0965 at 990.494 kb on - strand, within Dsui_0965 at 990.494 kb on - strand at 990.494 kb on - strand, within Dsui_0965
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 987,599 + +0.6 987,721 + Dsui_0962 0.16 +0.1 987,773 + Dsui_0962 0.21 -0.3 987,845 + Dsui_0962 0.29 +1.4 987,845 + Dsui_0962 0.29 -0.1 987,919 + Dsui_0962 0.36 -1.1 987,924 + Dsui_0962 0.36 +0.1 987,946 - Dsui_0962 0.38 -2.3 987,988 + Dsui_0962 0.43 +0.3 988,074 + Dsui_0962 0.51 -0.0 988,256 + Dsui_0962 0.69 +0.1 988,256 + Dsui_0962 0.69 +0.5 988,256 + Dsui_0962 0.69 -0.1 988,256 + Dsui_0962 0.69 -1.1 988,264 - Dsui_0962 0.70 +0.5 988,284 + Dsui_0962 0.72 +0.9 988,350 - Dsui_0962 0.78 -1.1 988,411 - Dsui_0962 0.84 +0.5 988,462 - Dsui_0962 0.89 +0.5 988,619 - +0.5 988,630 - +0.5 988,888 - Dsui_0963 0.33 -0.5 988,896 - Dsui_0963 0.34 -2.0 988,967 - Dsui_0963 0.42 -2.0 989,027 + Dsui_0963 0.48 -0.3 989,081 - Dsui_0963 0.54 +0.5 989,167 - Dsui_0963 0.64 -1.0 989,273 + Dsui_0963 0.75 +1.5 989,320 + Dsui_0963 0.80 -0.1 989,428 - -0.0 989,473 + -0.2 989,497 + -0.2 989,530 - +0.5 989,530 - +0.5 989,756 + Dsui_0964 0.51 -3.0 989,794 - Dsui_0964 0.59 +0.5 989,797 + Dsui_0964 0.60 +1.0 989,815 - Dsui_0964 0.63 -2.5 989,903 - Dsui_0964 0.81 -1.1 990,023 - -2.3 990,091 - +0.5 990,205 + Dsui_0965 0.17 +0.2 990,216 + Dsui_0965 0.19 +0.7 990,293 + Dsui_0965 0.30 +1.5 990,365 + Dsui_0965 0.40 +0.7 990,366 + Dsui_0965 0.40 -1.1 990,366 + Dsui_0965 0.40 +0.4 990,373 - Dsui_0965 0.41 -0.5 990,428 - Dsui_0965 0.49 -1.8 990,494 - Dsui_0965 0.59 -0.5 990,494 - +0.5 990,494 - Dsui_0965 0.59 -2.3
Or see this region's nucleotide sequence