Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0957 and Dsui_0958 are separated by 64 nucleotides Dsui_0958 and Dsui_0959 are separated by 212 nucleotides Dsui_0959 and Dsui_0960 are separated by 9 nucleotides
Dsui_0957: Dsui_0957 - nitrogenase molybdenum-iron protein beta chain, at 983,306 to 984,826
_0957
Dsui_0958: Dsui_0958 - ferredoxin, at 984,891 to 985,238
_0958
Dsui_0959: Dsui_0959 - hypothetical protein, at 985,451 to 985,690
_0959
Dsui_0960: Dsui_0960 - putative permease, at 985,700 to 986,755
_0960
Position (kb) 985
986 Strain fitness (log2 ratio) -2
-1
0
1
2 at 984.531 kb on - strand at 984.576 kb on - strand, within Dsui_0957 at 984.579 kb on + strand at 984.731 kb on - strand at 984.738 kb on + strand at 984.738 kb on + strand at 984.857 kb on - strand at 984.913 kb on + strand at 984.931 kb on - strand, within Dsui_0958 at 984.967 kb on - strand, within Dsui_0958 at 985.068 kb on + strand, within Dsui_0958 at 985.073 kb on + strand, within Dsui_0958 at 985.327 kb on + strand at 985.487 kb on - strand, within Dsui_0959 at 985.739 kb on + strand at 985.844 kb on + strand at 985.844 kb on + strand, within Dsui_0960 at 985.849 kb on + strand, within Dsui_0960 at 985.856 kb on + strand, within Dsui_0960 at 985.869 kb on - strand, within Dsui_0960 at 985.932 kb on + strand, within Dsui_0960 at 986.099 kb on + strand at 986.165 kb on + strand, within Dsui_0960 at 986.190 kb on + strand, within Dsui_0960 at 986.237 kb on + strand, within Dsui_0960 at 986.271 kb on - strand, within Dsui_0960 at 986.294 kb on - strand, within Dsui_0960 at 986.438 kb on + strand, within Dsui_0960 at 986.593 kb on + strand, within Dsui_0960 at 986.611 kb on + strand, within Dsui_0960
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 984,531 - +0.5 984,576 - Dsui_0957 0.83 +1.3 984,579 + +0.6 984,731 - +0.6 984,738 + +0.6 984,738 + -0.4 984,857 - -2.3 984,913 + +0.6 984,931 - Dsui_0958 0.11 +2.1 984,967 - Dsui_0958 0.22 -0.4 985,068 + Dsui_0958 0.51 -0.4 985,073 + Dsui_0958 0.52 +0.2 985,327 + -0.4 985,487 - Dsui_0959 0.15 -0.4 985,739 + -0.5 985,844 + +0.5 985,844 + Dsui_0960 0.14 +0.5 985,849 + Dsui_0960 0.14 -0.5 985,856 + Dsui_0960 0.15 +0.5 985,869 - Dsui_0960 0.16 -1.0 985,932 + Dsui_0960 0.22 -2.0 986,099 + +0.5 986,165 + Dsui_0960 0.44 +0.5 986,190 + Dsui_0960 0.46 +0.5 986,237 + Dsui_0960 0.51 -0.5 986,271 - Dsui_0960 0.54 +0.5 986,294 - Dsui_0960 0.56 -2.3 986,438 + Dsui_0960 0.70 -1.0 986,593 + Dsui_0960 0.85 -1.5 986,611 + Dsui_0960 0.86 +0.5
Or see this region's nucleotide sequence