Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0938 and Dsui_0939 are separated by 97 nucleotides Dsui_0939 and Dsui_0940 are separated by 93 nucleotides
Dsui_0938: Dsui_0938 - HD-GYP domain-containing protein, at 965,196 to 966,275
_0938
Dsui_0939: Dsui_0939 - diguanylate cyclase (GGDEF) domain-containing protein, at 966,373 to 968,235
_0939
Dsui_0940: Dsui_0940 - Nif-specific regulatory protein, at 968,329 to 970,062
_0940
Position (kb) 966
967
968
969 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 965.400 kb on - strand, within Dsui_0938 at 965.404 kb on + strand, within Dsui_0938 at 965.459 kb on + strand, within Dsui_0938 at 965.482 kb on - strand, within Dsui_0938 at 965.486 kb on - strand, within Dsui_0938 at 965.682 kb on + strand, within Dsui_0938 at 965.957 kb on + strand, within Dsui_0938 at 966.020 kb on - strand, within Dsui_0938 at 966.066 kb on - strand, within Dsui_0938 at 966.294 kb on - strand at 966.294 kb on - strand at 966.336 kb on - strand at 966.354 kb on + strand at 966.403 kb on - strand at 966.419 kb on + strand at 966.487 kb on - strand at 966.552 kb on - strand at 966.581 kb on + strand, within Dsui_0939 at 966.711 kb on + strand, within Dsui_0939 at 966.719 kb on - strand, within Dsui_0939 at 966.855 kb on + strand, within Dsui_0939 at 966.855 kb on + strand, within Dsui_0939 at 966.868 kb on - strand at 966.931 kb on - strand at 966.999 kb on - strand at 967.237 kb on + strand, within Dsui_0939 at 967.242 kb on + strand, within Dsui_0939 at 967.242 kb on + strand, within Dsui_0939 at 967.242 kb on + strand, within Dsui_0939 at 967.242 kb on + strand at 967.250 kb on + strand at 967.250 kb on - strand, within Dsui_0939 at 967.250 kb on - strand, within Dsui_0939 at 967.250 kb on - strand, within Dsui_0939 at 967.250 kb on - strand, within Dsui_0939 at 967.251 kb on - strand at 967.251 kb on - strand, within Dsui_0939 at 967.415 kb on - strand at 967.503 kb on - strand, within Dsui_0939 at 967.522 kb on - strand, within Dsui_0939 at 967.892 kb on - strand, within Dsui_0939 at 968.254 kb on + strand at 968.277 kb on - strand at 968.368 kb on - strand at 968.383 kb on - strand at 968.489 kb on - strand at 968.612 kb on - strand, within Dsui_0940 at 968.780 kb on + strand, within Dsui_0940 at 969.184 kb on - strand, within Dsui_0940 at 969.184 kb on - strand, within Dsui_0940 at 969.235 kb on - strand, within Dsui_0940
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 965,400 - Dsui_0938 0.19 +0.6 965,404 + Dsui_0938 0.19 +0.6 965,459 + Dsui_0938 0.24 +0.1 965,482 - Dsui_0938 0.26 -0.4 965,486 - Dsui_0938 0.27 -1.4 965,682 + Dsui_0938 0.45 -0.4 965,957 + Dsui_0938 0.70 -0.0 966,020 - Dsui_0938 0.76 -4.5 966,066 - Dsui_0938 0.81 -0.4 966,294 - -1.8 966,294 - +0.6 966,336 - +0.6 966,354 + +0.5 966,403 - -0.4 966,419 + -0.8 966,487 - -0.4 966,552 - -2.0 966,581 + Dsui_0939 0.11 -0.3 966,711 + Dsui_0939 0.18 +1.7 966,719 - Dsui_0939 0.19 -1.0 966,855 + Dsui_0939 0.26 -3.3 966,855 + Dsui_0939 0.26 +0.2 966,868 - +0.5 966,931 - +0.5 966,999 - +0.5 967,237 + Dsui_0939 0.46 +0.5 967,242 + Dsui_0939 0.47 -1.5 967,242 + Dsui_0939 0.47 -0.8 967,242 + Dsui_0939 0.47 +2.1 967,242 + +0.5 967,250 + +1.5 967,250 - Dsui_0939 0.47 -1.0 967,250 - Dsui_0939 0.47 +0.5 967,250 - Dsui_0939 0.47 -1.0 967,250 - Dsui_0939 0.47 -0.5 967,251 - +0.5 967,251 - Dsui_0939 0.47 -1.0 967,415 - +0.5 967,503 - Dsui_0939 0.61 -1.0 967,522 - Dsui_0939 0.62 +0.5 967,892 - Dsui_0939 0.82 -0.5 968,254 + +0.5 968,277 - -1.0 968,368 - -0.5 968,383 - -0.5 968,489 - +0.5 968,612 - Dsui_0940 0.16 -2.6 968,780 + Dsui_0940 0.26 -2.3 969,184 - Dsui_0940 0.49 +0.5 969,184 - Dsui_0940 0.49 -0.5 969,235 - Dsui_0940 0.52 -2.0
Or see this region's nucleotide sequence