Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0922 and Dsui_0923 are separated by 29 nucleotides Dsui_0923 and Dsui_0924 are separated by 76 nucleotides
Dsui_0922: Dsui_0922 - outer membrane receptor protein, at 949,007 to 951,028
_0922
Dsui_0923: Dsui_0923 - putative iron-regulated membrane protein, at 951,058 to 952,206
_0923
Dsui_0924: Dsui_0924 - putative permease, at 952,283 to 953,743
_0924
Position (kb)
951
952
953 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 950.244 kb on + strand, within Dsui_0922 at 950.307 kb on - strand, within Dsui_0922 at 950.399 kb on - strand, within Dsui_0922 at 950.400 kb on - strand, within Dsui_0922 at 950.415 kb on + strand, within Dsui_0922 at 950.415 kb on + strand, within Dsui_0922 at 950.447 kb on - strand, within Dsui_0922 at 950.805 kb on + strand, within Dsui_0922 at 950.974 kb on + strand at 951.030 kb on - strand at 951.056 kb on + strand at 951.189 kb on - strand at 951.208 kb on - strand, within Dsui_0923 at 951.252 kb on - strand, within Dsui_0923 at 951.467 kb on - strand, within Dsui_0923 at 951.527 kb on + strand, within Dsui_0923 at 951.638 kb on - strand at 951.657 kb on - strand, within Dsui_0923 at 951.761 kb on - strand, within Dsui_0923 at 951.761 kb on - strand, within Dsui_0923 at 951.782 kb on - strand, within Dsui_0923 at 951.943 kb on - strand, within Dsui_0923 at 952.022 kb on + strand, within Dsui_0923 at 952.027 kb on + strand at 952.027 kb on + strand, within Dsui_0923 at 952.030 kb on - strand, within Dsui_0923 at 952.051 kb on + strand, within Dsui_0923 at 952.062 kb on + strand, within Dsui_0923 at 952.159 kb on - strand at 952.208 kb on - strand at 952.249 kb on + strand at 952.318 kb on - strand at 952.402 kb on - strand at 952.526 kb on - strand, within Dsui_0924 at 952.563 kb on + strand at 952.621 kb on + strand at 952.621 kb on + strand, within Dsui_0924 at 952.629 kb on - strand at 952.629 kb on - strand, within Dsui_0924 at 952.629 kb on - strand at 952.773 kb on - strand, within Dsui_0924 at 952.883 kb on - strand at 952.889 kb on + strand, within Dsui_0924 at 952.889 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 950,244 + Dsui_0922 0.61 -1.5 950,307 - Dsui_0922 0.64 -0.5 950,399 - Dsui_0922 0.69 +0.5 950,400 - Dsui_0922 0.69 +0.5 950,415 + Dsui_0922 0.70 -1.3 950,415 + Dsui_0922 0.70 +2.1 950,447 - Dsui_0922 0.71 +0.5 950,805 + Dsui_0922 0.89 -0.5 950,974 + -0.5 951,030 - +0.5 951,056 + +2.5 951,189 - +0.5 951,208 - Dsui_0923 0.13 -1.8 951,252 - Dsui_0923 0.17 +0.5 951,467 - Dsui_0923 0.36 -1.1 951,527 + Dsui_0923 0.41 -1.5 951,638 - +0.5 951,657 - Dsui_0923 0.52 +0.5 951,761 - Dsui_0923 0.61 -1.1 951,761 - Dsui_0923 0.61 -1.5 951,782 - Dsui_0923 0.63 -1.8 951,943 - Dsui_0923 0.77 -0.2 952,022 + Dsui_0923 0.84 -1.8 952,027 + +0.5 952,027 + Dsui_0923 0.84 -0.5 952,030 - Dsui_0923 0.85 -1.5 952,051 + Dsui_0923 0.86 -2.5 952,062 + Dsui_0923 0.87 +1.1 952,159 - -0.5 952,208 - +0.5 952,249 + -1.1 952,318 - -0.5 952,402 - +0.5 952,526 - Dsui_0924 0.17 -1.2 952,563 + +0.5 952,621 + -0.5 952,621 + Dsui_0924 0.23 +0.5 952,629 - +0.5 952,629 - Dsui_0924 0.24 -0.5 952,629 - +0.5 952,773 - Dsui_0924 0.34 -1.8 952,883 - -0.5 952,889 + Dsui_0924 0.41 -0.2 952,889 + -0.5
Or see this region's nucleotide sequence