Strain Fitness in Dechlorosoma suillum PS around Dsui_0916

Experiment: ALP with Fusidic 0.02 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0915 and Dsui_0916 are separated by 1 nucleotidesDsui_0916 and Dsui_0917 overlap by 11 nucleotides Dsui_0915: Dsui_0915 - hypothetical protein, at 938,018 to 939,034 _0915 Dsui_0916: Dsui_0916 - TniB protein, at 939,036 to 939,932 _0916 Dsui_0917: Dsui_0917 - integrase family protein, at 939,922 to 941,823 _0917 Position (kb) 939 940Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 938.037 kb on - strandat 938.088 kb on + strandat 938.097 kb on + strandat 938.097 kb on + strandat 938.132 kb on + strand, within Dsui_0915at 938.133 kb on + strand, within Dsui_0915at 938.133 kb on + strand, within Dsui_0915at 938.138 kb on + strand, within Dsui_0915at 938.138 kb on + strand, within Dsui_0915at 938.138 kb on + strand, within Dsui_0915at 938.146 kb on - strand, within Dsui_0915at 938.149 kb on + strand, within Dsui_0915at 938.188 kb on + strand, within Dsui_0915at 938.194 kb on + strand, within Dsui_0915at 938.196 kb on - strand, within Dsui_0915at 938.245 kb on + strand, within Dsui_0915at 938.250 kb on + strand, within Dsui_0915at 938.253 kb on - strand, within Dsui_0915at 938.253 kb on - strand, within Dsui_0915at 938.253 kb on - strand, within Dsui_0915at 938.258 kb on - strand, within Dsui_0915at 938.258 kb on - strand, within Dsui_0915at 938.258 kb on - strand, within Dsui_0915at 938.269 kb on + strand, within Dsui_0915at 938.301 kb on + strand, within Dsui_0915at 938.301 kb on + strand, within Dsui_0915at 938.301 kb on + strandat 938.309 kb on - strand, within Dsui_0915at 938.309 kb on - strand, within Dsui_0915at 938.315 kb on + strand, within Dsui_0915at 938.315 kb on + strand, within Dsui_0915at 938.315 kb on + strand, within Dsui_0915at 938.315 kb on + strand, within Dsui_0915at 938.315 kb on + strand, within Dsui_0915at 938.315 kb on + strand, within Dsui_0915at 938.320 kb on + strand, within Dsui_0915at 938.320 kb on + strand, within Dsui_0915at 938.320 kb on + strand, within Dsui_0915at 938.323 kb on - strand, within Dsui_0915at 938.323 kb on - strand, within Dsui_0915at 938.323 kb on - strand, within Dsui_0915at 938.323 kb on - strand, within Dsui_0915at 938.323 kb on - strand, within Dsui_0915at 938.323 kb on - strand, within Dsui_0915at 938.325 kb on + strand, within Dsui_0915at 938.325 kb on + strand, within Dsui_0915at 938.328 kb on - strand, within Dsui_0915at 938.328 kb on - strand, within Dsui_0915at 938.328 kb on - strand, within Dsui_0915at 938.328 kb on - strand, within Dsui_0915at 938.328 kb on - strand, within Dsui_0915at 938.328 kb on - strand, within Dsui_0915at 938.328 kb on - strand, within Dsui_0915at 938.328 kb on - strand, within Dsui_0915at 938.328 kb on - strand, within Dsui_0915at 938.328 kb on - strand, within Dsui_0915at 938.333 kb on - strand, within Dsui_0915at 938.372 kb on + strand, within Dsui_0915at 938.380 kb on - strand, within Dsui_0915at 938.381 kb on + strand, within Dsui_0915at 938.381 kb on + strand, within Dsui_0915at 938.431 kb on + strand, within Dsui_0915at 938.439 kb on - strand, within Dsui_0915at 938.474 kb on + strand, within Dsui_0915at 938.482 kb on - strand, within Dsui_0915at 938.482 kb on - strand, within Dsui_0915at 938.482 kb on - strand, within Dsui_0915at 938.505 kb on + strand, within Dsui_0915at 938.513 kb on - strand, within Dsui_0915at 938.513 kb on - strand, within Dsui_0915at 938.521 kb on - strand, within Dsui_0915at 938.521 kb on - strand, within Dsui_0915at 938.586 kb on + strand, within Dsui_0915at 938.594 kb on - strand, within Dsui_0915at 938.594 kb on - strand, within Dsui_0915at 938.594 kb on - strand, within Dsui_0915at 938.609 kb on + strand, within Dsui_0915at 938.615 kb on + strand, within Dsui_0915at 938.626 kb on + strand, within Dsui_0915at 938.637 kb on + strand, within Dsui_0915at 938.650 kb on + strand, within Dsui_0915at 938.669 kb on - strand, within Dsui_0915at 938.735 kb on - strand, within Dsui_0915at 938.754 kb on - strand, within Dsui_0915at 938.807 kb on - strand, within Dsui_0915at 938.812 kb on - strand, within Dsui_0915at 938.828 kb on + strand, within Dsui_0915at 938.839 kb on - strand, within Dsui_0915at 938.943 kb on + strandat 938.943 kb on + strandat 938.943 kb on + strandat 938.948 kb on + strandat 938.948 kb on + strandat 938.948 kb on + strandat 938.948 kb on + strandat 938.956 kb on - strandat 938.996 kb on + strandat 938.997 kb on + strandat 939.006 kb on - strandat 939.010 kb on - strandat 939.055 kb on - strandat 939.059 kb on + strandat 939.059 kb on + strandat 939.067 kb on - strandat 939.150 kb on - strand, within Dsui_0916at 939.150 kb on - strand, within Dsui_0916at 939.192 kb on - strand, within Dsui_0916at 939.244 kb on + strand, within Dsui_0916at 939.250 kb on - strand, within Dsui_0916at 939.252 kb on - strand, within Dsui_0916at 939.252 kb on - strand, within Dsui_0916at 939.267 kb on - strand, within Dsui_0916at 939.315 kb on - strand, within Dsui_0916at 939.336 kb on + strand, within Dsui_0916at 939.336 kb on + strand, within Dsui_0916at 939.344 kb on - strand, within Dsui_0916at 939.344 kb on - strand, within Dsui_0916at 939.353 kb on - strand, within Dsui_0916at 939.353 kb on - strand, within Dsui_0916at 939.376 kb on - strand, within Dsui_0916at 939.501 kb on - strand, within Dsui_0916at 939.526 kb on - strand, within Dsui_0916at 939.534 kb on - strand, within Dsui_0916at 939.534 kb on - strand, within Dsui_0916at 939.544 kb on - strand, within Dsui_0916at 939.559 kb on + strand, within Dsui_0916at 939.559 kb on + strand, within Dsui_0916at 939.559 kb on + strand, within Dsui_0916at 939.559 kb on + strand, within Dsui_0916at 939.559 kb on + strand, within Dsui_0916at 939.559 kb on + strand, within Dsui_0916at 939.559 kb on + strand, within Dsui_0916at 939.559 kb on + strand, within Dsui_0916at 939.559 kb on + strand, within Dsui_0916at 939.559 kb on + strand, within Dsui_0916at 939.567 kb on - strand, within Dsui_0916at 939.567 kb on - strand, within Dsui_0916at 939.567 kb on - strand, within Dsui_0916at 939.567 kb on - strand, within Dsui_0916at 939.567 kb on - strand, within Dsui_0916at 939.567 kb on - strand, within Dsui_0916at 939.660 kb on - strand, within Dsui_0916at 939.664 kb on + strand, within Dsui_0916at 939.666 kb on - strand, within Dsui_0916at 939.692 kb on - strand, within Dsui_0916at 939.711 kb on + strand, within Dsui_0916at 939.726 kb on - strand, within Dsui_0916at 939.726 kb on - strand, within Dsui_0916at 939.777 kb on - strand, within Dsui_0916at 939.799 kb on - strand, within Dsui_0916at 939.817 kb on + strand, within Dsui_0916at 939.817 kb on + strand, within Dsui_0916at 939.817 kb on + strand, within Dsui_0916at 939.817 kb on + strand, within Dsui_0916at 939.818 kb on - strand, within Dsui_0916at 939.820 kb on - strand, within Dsui_0916at 939.822 kb on + strand, within Dsui_0916at 939.825 kb on - strand, within Dsui_0916at 939.835 kb on - strand, within Dsui_0916at 940.092 kb on + strandat 940.100 kb on - strandat 940.117 kb on + strand, within Dsui_0917at 940.185 kb on - strand, within Dsui_0917at 940.186 kb on + strand, within Dsui_0917at 940.209 kb on - strand, within Dsui_0917at 940.211 kb on + strand, within Dsui_0917at 940.228 kb on + strand, within Dsui_0917at 940.229 kb on - strand, within Dsui_0917at 940.229 kb on - strand, within Dsui_0917at 940.281 kb on + strand, within Dsui_0917at 940.299 kb on + strand, within Dsui_0917at 940.358 kb on + strand, within Dsui_0917at 940.360 kb on + strand, within Dsui_0917at 940.368 kb on - strand, within Dsui_0917at 940.373 kb on - strand, within Dsui_0917at 940.378 kb on + strand, within Dsui_0917at 940.380 kb on + strand, within Dsui_0917at 940.380 kb on + strand, within Dsui_0917at 940.385 kb on + strandat 940.385 kb on - strand, within Dsui_0917at 940.388 kb on - strand, within Dsui_0917at 940.430 kb on + strand, within Dsui_0917at 940.445 kb on - strand, within Dsui_0917at 940.445 kb on - strand, within Dsui_0917at 940.467 kb on + strand, within Dsui_0917at 940.475 kb on - strand, within Dsui_0917at 940.479 kb on + strand, within Dsui_0917at 940.597 kb on + strand, within Dsui_0917at 940.605 kb on + strand, within Dsui_0917at 940.605 kb on + strand, within Dsui_0917at 940.605 kb on + strand, within Dsui_0917at 940.605 kb on + strand, within Dsui_0917at 940.605 kb on + strand, within Dsui_0917at 940.605 kb on + strand, within Dsui_0917at 940.605 kb on + strand, within Dsui_0917at 940.605 kb on + strand, within Dsui_0917at 940.605 kb on + strand, within Dsui_0917at 940.608 kb on - strand, within Dsui_0917at 940.613 kb on - strand, within Dsui_0917at 940.613 kb on - strand, within Dsui_0917at 940.613 kb on - strand, within Dsui_0917at 940.613 kb on - strand, within Dsui_0917at 940.683 kb on - strand, within Dsui_0917at 940.683 kb on - strand, within Dsui_0917at 940.745 kb on + strand, within Dsui_0917at 940.745 kb on + strand, within Dsui_0917at 940.825 kb on + strand, within Dsui_0917at 940.877 kb on + strand, within Dsui_0917at 940.898 kb on + strand, within Dsui_0917at 940.899 kb on + strand, within Dsui_0917at 940.899 kb on + strand, within Dsui_0917at 940.907 kb on - strand, within Dsui_0917

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml
remove
938,037 - -0.6
938,088 + -1.2
938,097 + -1.2
938,097 + +0.4
938,132 + Dsui_0915 0.11 -0.6
938,133 + Dsui_0915 0.11 -0.6
938,133 + Dsui_0915 0.11 -1.6
938,138 + Dsui_0915 0.12 -0.6
938,138 + Dsui_0915 0.12 +0.4
938,138 + Dsui_0915 0.12 -0.6
938,146 - Dsui_0915 0.13 +0.4
938,149 + Dsui_0915 0.13 -0.6
938,188 + Dsui_0915 0.17 +0.4
938,194 + Dsui_0915 0.17 +0.4
938,196 - Dsui_0915 0.18 +0.4
938,245 + Dsui_0915 0.22 -1.9
938,250 + Dsui_0915 0.23 +0.4
938,253 - Dsui_0915 0.23 -1.9
938,253 - Dsui_0915 0.23 +0.4
938,253 - Dsui_0915 0.23 +0.4
938,258 - Dsui_0915 0.24 -0.6
938,258 - Dsui_0915 0.24 +1.0
938,258 - Dsui_0915 0.24 -0.6
938,269 + Dsui_0915 0.25 -0.6
938,301 + Dsui_0915 0.28 -1.2
938,301 + Dsui_0915 0.28 -0.6
938,301 + +0.4
938,309 - Dsui_0915 0.29 +0.4
938,309 - Dsui_0915 0.29 +0.4
938,315 + Dsui_0915 0.29 -1.6
938,315 + Dsui_0915 0.29 -1.6
938,315 + Dsui_0915 0.29 -0.6
938,315 + Dsui_0915 0.29 +0.4
938,315 + Dsui_0915 0.29 -0.6
938,315 + Dsui_0915 0.29 +0.4
938,320 + Dsui_0915 0.30 -0.6
938,320 + Dsui_0915 0.30 +0.4
938,320 + Dsui_0915 0.30 -0.6
938,323 - Dsui_0915 0.30 -0.6
938,323 - Dsui_0915 0.30 +0.4
938,323 - Dsui_0915 0.30 -0.6
938,323 - Dsui_0915 0.30 +0.4
938,323 - Dsui_0915 0.30 -2.9
938,323 - Dsui_0915 0.30 -0.6
938,325 + Dsui_0915 0.30 +0.4
938,325 + Dsui_0915 0.30 +0.4
938,328 - Dsui_0915 0.30 -1.2
938,328 - Dsui_0915 0.30 -0.6
938,328 - Dsui_0915 0.30 -1.2
938,328 - Dsui_0915 0.30 -1.6
938,328 - Dsui_0915 0.30 +0.4
938,328 - Dsui_0915 0.30 -1.6
938,328 - Dsui_0915 0.30 +0.4
938,328 - Dsui_0915 0.30 -0.6
938,328 - Dsui_0915 0.30 +0.4
938,328 - Dsui_0915 0.30 -0.6
938,333 - Dsui_0915 0.31 +0.4
938,372 + Dsui_0915 0.35 +0.4
938,380 - Dsui_0915 0.36 -0.6
938,381 + Dsui_0915 0.36 +0.4
938,381 + Dsui_0915 0.36 +0.4
938,431 + Dsui_0915 0.41 +0.4
938,439 - Dsui_0915 0.41 -0.6
938,474 + Dsui_0915 0.45 +0.4
938,482 - Dsui_0915 0.46 -1.2
938,482 - Dsui_0915 0.46 -0.6
938,482 - Dsui_0915 0.46 +0.4
938,505 + Dsui_0915 0.48 -1.2
938,513 - Dsui_0915 0.49 -0.6
938,513 - Dsui_0915 0.49 +0.4
938,521 - Dsui_0915 0.49 +0.4
938,521 - Dsui_0915 0.49 +0.4
938,586 + Dsui_0915 0.56 +0.4
938,594 - Dsui_0915 0.57 +0.4
938,594 - Dsui_0915 0.57 -1.2
938,594 - Dsui_0915 0.57 -2.2
938,609 + Dsui_0915 0.58 -1.9
938,615 + Dsui_0915 0.59 +0.4
938,626 + Dsui_0915 0.60 +0.4
938,637 + Dsui_0915 0.61 +0.4
938,650 + Dsui_0915 0.62 -2.6
938,669 - Dsui_0915 0.64 +0.4
938,735 - Dsui_0915 0.71 -1.9
938,754 - Dsui_0915 0.72 -0.6
938,807 - Dsui_0915 0.78 -2.2
938,812 - Dsui_0915 0.78 +0.4
938,828 + Dsui_0915 0.80 -1.9
938,839 - Dsui_0915 0.81 -1.6
938,943 + -0.6
938,943 + -1.9
938,943 + -1.6
938,948 + -1.6
938,948 + -0.6
938,948 + +0.4
938,948 + +0.4
938,956 - -0.6
938,996 + -2.6
938,997 + +0.4
939,006 - +0.4
939,010 - -0.6
939,055 - +0.4
939,059 + +0.4
939,059 + +0.4
939,067 - +0.4
939,150 - Dsui_0916 0.13 +0.4
939,150 - Dsui_0916 0.13 -2.4
939,192 - Dsui_0916 0.17 -2.4
939,244 + Dsui_0916 0.23 -1.6
939,250 - Dsui_0916 0.24 -1.6
939,252 - Dsui_0916 0.24 +0.4
939,252 - Dsui_0916 0.24 +0.4
939,267 - Dsui_0916 0.26 +1.4
939,315 - Dsui_0916 0.31 -1.1
939,336 + Dsui_0916 0.33 -2.7
939,336 + Dsui_0916 0.33 -0.6
939,344 - Dsui_0916 0.34 +0.4
939,344 - Dsui_0916 0.34 +0.4
939,353 - Dsui_0916 0.35 -0.6
939,353 - Dsui_0916 0.35 -0.6
939,376 - Dsui_0916 0.38 +0.4
939,501 - Dsui_0916 0.52 +0.4
939,526 - Dsui_0916 0.55 +0.4
939,534 - Dsui_0916 0.56 +0.4
939,534 - Dsui_0916 0.56 -0.6
939,544 - Dsui_0916 0.57 -1.1
939,559 + Dsui_0916 0.58 -0.6
939,559 + Dsui_0916 0.58 -1.1
939,559 + Dsui_0916 0.58 -1.6
939,559 + Dsui_0916 0.58 -0.6
939,559 + Dsui_0916 0.58 +0.4
939,559 + Dsui_0916 0.58 +0.4
939,559 + Dsui_0916 0.58 +0.4
939,559 + Dsui_0916 0.58 +0.4
939,559 + Dsui_0916 0.58 -0.6
939,559 + Dsui_0916 0.58 +0.4
939,567 - Dsui_0916 0.59 +0.4
939,567 - Dsui_0916 0.59 +0.4
939,567 - Dsui_0916 0.59 -1.9
939,567 - Dsui_0916 0.59 -0.6
939,567 - Dsui_0916 0.59 +0.4
939,567 - Dsui_0916 0.59 -0.6
939,660 - Dsui_0916 0.70 -0.6
939,664 + Dsui_0916 0.70 +0.4
939,666 - Dsui_0916 0.70 -1.9
939,692 - Dsui_0916 0.73 +0.4
939,711 + Dsui_0916 0.75 +0.4
939,726 - Dsui_0916 0.77 -2.4
939,726 - Dsui_0916 0.77 -1.1
939,777 - Dsui_0916 0.83 +0.4
939,799 - Dsui_0916 0.85 -0.6
939,817 + Dsui_0916 0.87 +0.4
939,817 + Dsui_0916 0.87 +2.0
939,817 + Dsui_0916 0.87 -0.6
939,817 + Dsui_0916 0.87 -1.1
939,818 - Dsui_0916 0.87 -0.6
939,820 - Dsui_0916 0.87 +0.4
939,822 + Dsui_0916 0.88 -0.6
939,825 - Dsui_0916 0.88 -2.9
939,835 - Dsui_0916 0.89 -1.1
940,092 + +0.4
940,100 - -0.6
940,117 + Dsui_0917 0.10 +0.4
940,185 - Dsui_0917 0.14 -0.6
940,186 + Dsui_0917 0.14 -0.6
940,209 - Dsui_0917 0.15 +0.4
940,211 + Dsui_0917 0.15 -2.6
940,228 + Dsui_0917 0.16 -0.6
940,229 - Dsui_0917 0.16 +0.4
940,229 - Dsui_0917 0.16 -1.1
940,281 + Dsui_0917 0.19 +0.4
940,299 + Dsui_0917 0.20 +0.4
940,358 + Dsui_0917 0.23 -2.1
940,360 + Dsui_0917 0.23 +0.4
940,368 - Dsui_0917 0.23 -1.1
940,373 - Dsui_0917 0.24 +0.4
940,378 + Dsui_0917 0.24 +0.4
940,380 + Dsui_0917 0.24 -1.1
940,380 + Dsui_0917 0.24 -0.6
940,385 + +0.4
940,385 - Dsui_0917 0.24 +0.4
940,388 - Dsui_0917 0.25 -0.6
940,430 + Dsui_0917 0.27 -1.6
940,445 - Dsui_0917 0.27 -1.1
940,445 - Dsui_0917 0.27 -1.1
940,467 + Dsui_0917 0.29 +0.4
940,475 - Dsui_0917 0.29 -0.6
940,479 + Dsui_0917 0.29 -0.6
940,597 + Dsui_0917 0.35 +0.4
940,605 + Dsui_0917 0.36 +0.4
940,605 + Dsui_0917 0.36 -2.1
940,605 + Dsui_0917 0.36 +0.4
940,605 + Dsui_0917 0.36 +0.4
940,605 + Dsui_0917 0.36 +0.4
940,605 + Dsui_0917 0.36 +0.4
940,605 + Dsui_0917 0.36 -2.4
940,605 + Dsui_0917 0.36 +0.4
940,605 + Dsui_0917 0.36 +0.4
940,608 - Dsui_0917 0.36 +0.4
940,613 - Dsui_0917 0.36 +0.4
940,613 - Dsui_0917 0.36 -1.1
940,613 - Dsui_0917 0.36 +0.4
940,613 - Dsui_0917 0.36 +0.4
940,683 - Dsui_0917 0.40 -0.6
940,683 - Dsui_0917 0.40 -1.1
940,745 + Dsui_0917 0.43 +0.4
940,745 + Dsui_0917 0.43 -1.1
940,825 + Dsui_0917 0.47 -0.6
940,877 + Dsui_0917 0.50 +0.4
940,898 + Dsui_0917 0.51 -1.1
940,899 + Dsui_0917 0.51 +0.4
940,899 + Dsui_0917 0.51 -1.6
940,907 - Dsui_0917 0.52 -1.1

Or see this region's nucleotide sequence