Strain Fitness in Dechlorosoma suillum PS around Dsui_0897

Experiment: ALP with Fusidic 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0896 and Dsui_0897 are separated by 117 nucleotidesDsui_0897 and Dsui_0898 overlap by 1 nucleotides Dsui_0896: Dsui_0896 - heavy metal efflux pump, cobalt-zinc-cadmium, at 911,340 to 914,450 _0896 Dsui_0897: Dsui_0897 - RND family efflux transporter, MFP subunit, at 914,568 to 915,755 _0897 Dsui_0898: Dsui_0898 - outer membrane protein, at 915,755 to 917,002 _0898 Position (kb) 914 915 916Strain fitness (log2 ratio) -3 -2 -1 0 1at 913.645 kb on - strandat 913.659 kb on + strand, within Dsui_0896at 913.659 kb on + strand, within Dsui_0896at 913.667 kb on - strand, within Dsui_0896at 913.673 kb on - strand, within Dsui_0896at 913.735 kb on - strand, within Dsui_0896at 913.778 kb on + strand, within Dsui_0896at 913.840 kb on - strand, within Dsui_0896at 913.855 kb on + strand, within Dsui_0896at 913.945 kb on + strandat 913.953 kb on - strand, within Dsui_0896at 913.953 kb on - strand, within Dsui_0896at 913.958 kb on - strand, within Dsui_0896at 913.958 kb on - strand, within Dsui_0896at 914.015 kb on + strand, within Dsui_0896at 914.015 kb on + strandat 914.039 kb on + strand, within Dsui_0896at 914.066 kb on + strand, within Dsui_0896at 914.066 kb on + strand, within Dsui_0896at 914.080 kb on + strand, within Dsui_0896at 914.162 kb on + strandat 914.163 kb on + strandat 914.166 kb on - strandat 914.191 kb on - strandat 914.300 kb on - strandat 914.468 kb on + strandat 914.617 kb on - strandat 914.645 kb on + strandat 914.712 kb on + strand, within Dsui_0897at 914.802 kb on - strand, within Dsui_0897at 914.874 kb on + strandat 914.876 kb on + strand, within Dsui_0897at 914.889 kb on + strandat 914.897 kb on + strand, within Dsui_0897at 914.983 kb on + strandat 915.059 kb on - strand, within Dsui_0897at 915.079 kb on + strandat 915.112 kb on - strand, within Dsui_0897at 915.340 kb on - strand, within Dsui_0897at 915.340 kb on - strand, within Dsui_0897at 915.421 kb on + strand, within Dsui_0897at 915.428 kb on + strandat 915.563 kb on - strand, within Dsui_0897at 915.726 kb on + strandat 915.773 kb on + strandat 915.829 kb on + strandat 915.875 kb on - strandat 915.883 kb on + strand, within Dsui_0898at 915.937 kb on + strand, within Dsui_0898at 915.945 kb on - strandat 915.956 kb on - strand, within Dsui_0898at 915.968 kb on + strand, within Dsui_0898at 915.981 kb on + strand, within Dsui_0898at 916.039 kb on - strand, within Dsui_0898at 916.044 kb on - strand, within Dsui_0898at 916.131 kb on - strand, within Dsui_0898at 916.137 kb on - strand, within Dsui_0898at 916.198 kb on - strand, within Dsui_0898at 916.199 kb on - strandat 916.204 kb on + strand, within Dsui_0898at 916.212 kb on - strand, within Dsui_0898at 916.263 kb on + strand, within Dsui_0898at 916.287 kb on - strand, within Dsui_0898at 916.302 kb on + strand, within Dsui_0898at 916.310 kb on - strand, within Dsui_0898at 916.330 kb on + strand, within Dsui_0898at 916.340 kb on - strand, within Dsui_0898at 916.342 kb on + strand, within Dsui_0898at 916.407 kb on + strand, within Dsui_0898at 916.417 kb on + strand, within Dsui_0898at 916.437 kb on - strandat 916.455 kb on + strand, within Dsui_0898at 916.476 kb on + strand, within Dsui_0898at 916.476 kb on + strand, within Dsui_0898at 916.592 kb on + strand, within Dsui_0898at 916.615 kb on + strandat 916.623 kb on - strand, within Dsui_0898at 916.667 kb on - strand, within Dsui_0898at 916.693 kb on - strandat 916.720 kb on + strand, within Dsui_0898at 916.732 kb on + strand, within Dsui_0898

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml
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913,645 - +1.5
913,659 + Dsui_0896 0.75 -0.5
913,659 + Dsui_0896 0.75 -1.1
913,667 - Dsui_0896 0.75 +0.5
913,673 - Dsui_0896 0.75 -2.5
913,735 - Dsui_0896 0.77 -1.1
913,778 + Dsui_0896 0.78 +0.5
913,840 - Dsui_0896 0.80 -1.8
913,855 + Dsui_0896 0.81 -0.5
913,945 + -0.5
913,953 - Dsui_0896 0.84 -2.2
913,953 - Dsui_0896 0.84 -0.5
913,958 - Dsui_0896 0.84 -0.2
913,958 - Dsui_0896 0.84 -2.1
914,015 + Dsui_0896 0.86 -0.1
914,015 + -0.5
914,039 + Dsui_0896 0.87 +0.5
914,066 + Dsui_0896 0.88 +0.5
914,066 + Dsui_0896 0.88 -0.5
914,080 + Dsui_0896 0.88 -1.1
914,162 + +0.5
914,163 + -0.5
914,166 - -0.5
914,191 - -0.5
914,300 - -1.3
914,468 + -2.1
914,617 - +0.5
914,645 + -1.1
914,712 + Dsui_0897 0.12 -1.1
914,802 - Dsui_0897 0.20 -1.5
914,874 + -0.5
914,876 + Dsui_0897 0.26 -0.5
914,889 + -1.9
914,897 + Dsui_0897 0.28 -1.9
914,983 + +0.5
915,059 - Dsui_0897 0.41 -0.5
915,079 + +0.5
915,112 - Dsui_0897 0.46 -0.5
915,340 - Dsui_0897 0.65 -2.1
915,340 - Dsui_0897 0.65 -1.9
915,421 + Dsui_0897 0.72 -1.5
915,428 + +0.5
915,563 - Dsui_0897 0.84 +0.5
915,726 + -1.5
915,773 + -0.6
915,829 + -0.6
915,875 - +0.4
915,883 + Dsui_0898 0.10 +0.4
915,937 + Dsui_0898 0.15 -1.6
915,945 - +0.4
915,956 - Dsui_0898 0.16 -1.6
915,968 + Dsui_0898 0.17 +0.4
915,981 + Dsui_0898 0.18 -1.1
916,039 - Dsui_0898 0.23 -1.1
916,044 - Dsui_0898 0.23 -2.1
916,131 - Dsui_0898 0.30 -2.4
916,137 - Dsui_0898 0.31 -1.1
916,198 - Dsui_0898 0.35 -0.6
916,199 - +0.4
916,204 + Dsui_0898 0.36 +0.4
916,212 - Dsui_0898 0.37 -0.6
916,263 + Dsui_0898 0.41 -3.3
916,287 - Dsui_0898 0.43 -0.6
916,302 + Dsui_0898 0.44 +0.4
916,310 - Dsui_0898 0.44 -3.6
916,330 + Dsui_0898 0.46 -0.6
916,340 - Dsui_0898 0.47 +0.4
916,342 + Dsui_0898 0.47 +0.4
916,407 + Dsui_0898 0.52 +0.4
916,417 + Dsui_0898 0.53 +0.4
916,437 - +0.4
916,455 + Dsui_0898 0.56 +0.4
916,476 + Dsui_0898 0.58 -2.7
916,476 + Dsui_0898 0.58 +0.4
916,592 + Dsui_0898 0.67 -0.6
916,615 + +0.4
916,623 - Dsui_0898 0.70 -1.9
916,667 - Dsui_0898 0.73 -1.1
916,693 - +0.4
916,720 + Dsui_0898 0.77 -1.1
916,732 + Dsui_0898 0.78 -2.7

Or see this region's nucleotide sequence