Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0893 and Dsui_0894 are separated by 0 nucleotides Dsui_0894 and Dsui_0895 are separated by 83 nucleotides Dsui_0895 and Dsui_0896 are separated by 18 nucleotides
Dsui_0893: Dsui_0893 - rare lipoprotein A, at 907,234 to 908,274
_0893
Dsui_0894: Dsui_0894 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 908,275 to 910,899
_0894
Dsui_0895: Dsui_0895 - nitrogen regulatory protein PII, at 910,983 to 911,321
_0895
Dsui_0896: Dsui_0896 - heavy metal efflux pump, cobalt-zinc-cadmium, at 911,340 to 914,450
_0896
Position (kb)
908
909
910
911 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 907.276 kb on - strand at 907.477 kb on + strand, within Dsui_0893 at 907.505 kb on + strand, within Dsui_0893 at 907.510 kb on + strand, within Dsui_0893 at 907.542 kb on + strand, within Dsui_0893 at 907.652 kb on + strand, within Dsui_0893 at 907.665 kb on - strand at 907.988 kb on - strand, within Dsui_0893 at 908.111 kb on - strand, within Dsui_0893 at 908.111 kb on - strand, within Dsui_0893 at 908.181 kb on + strand at 908.186 kb on + strand at 908.237 kb on - strand at 908.247 kb on - strand at 908.281 kb on - strand at 908.342 kb on + strand at 908.375 kb on + strand at 908.375 kb on + strand at 908.383 kb on - strand at 908.422 kb on - strand at 908.428 kb on + strand at 908.428 kb on + strand at 908.528 kb on + strand at 908.592 kb on + strand, within Dsui_0894 at 908.649 kb on - strand, within Dsui_0894 at 908.670 kb on + strand, within Dsui_0894 at 908.761 kb on + strand, within Dsui_0894 at 908.849 kb on + strand, within Dsui_0894 at 908.910 kb on + strand, within Dsui_0894 at 908.953 kb on - strand, within Dsui_0894 at 909.014 kb on + strand, within Dsui_0894 at 909.024 kb on + strand, within Dsui_0894 at 909.031 kb on + strand, within Dsui_0894 at 909.039 kb on - strand, within Dsui_0894 at 909.097 kb on - strand, within Dsui_0894 at 909.115 kb on + strand, within Dsui_0894 at 909.115 kb on + strand, within Dsui_0894 at 909.115 kb on + strand, within Dsui_0894 at 909.152 kb on - strand, within Dsui_0894 at 909.179 kb on - strand at 909.203 kb on - strand at 909.215 kb on - strand, within Dsui_0894 at 909.237 kb on - strand, within Dsui_0894 at 909.269 kb on - strand, within Dsui_0894 at 909.289 kb on - strand, within Dsui_0894 at 909.336 kb on + strand, within Dsui_0894 at 909.379 kb on - strand, within Dsui_0894 at 909.403 kb on - strand, within Dsui_0894 at 909.405 kb on + strand, within Dsui_0894 at 909.446 kb on + strand, within Dsui_0894 at 909.446 kb on + strand, within Dsui_0894 at 909.492 kb on + strand, within Dsui_0894 at 909.496 kb on - strand, within Dsui_0894 at 909.527 kb on - strand, within Dsui_0894 at 909.610 kb on - strand, within Dsui_0894 at 909.677 kb on - strand, within Dsui_0894 at 909.800 kb on - strand, within Dsui_0894 at 909.824 kb on - strand, within Dsui_0894 at 909.950 kb on + strand, within Dsui_0894 at 910.037 kb on + strand at 910.046 kb on - strand, within Dsui_0894 at 910.053 kb on + strand, within Dsui_0894 at 910.129 kb on + strand at 910.171 kb on + strand, within Dsui_0894 at 910.179 kb on - strand, within Dsui_0894 at 910.184 kb on + strand, within Dsui_0894 at 910.235 kb on - strand at 910.287 kb on + strand, within Dsui_0894 at 910.287 kb on + strand, within Dsui_0894 at 910.357 kb on + strand, within Dsui_0894 at 910.402 kb on + strand, within Dsui_0894 at 910.460 kb on + strand, within Dsui_0894 at 910.512 kb on + strand, within Dsui_0894 at 910.592 kb on - strand, within Dsui_0894 at 910.631 kb on + strand, within Dsui_0894 at 910.631 kb on + strand, within Dsui_0894 at 910.641 kb on + strand at 910.658 kb on - strand at 910.667 kb on + strand at 910.727 kb on - strand at 910.916 kb on - strand at 911.155 kb on - strand, within Dsui_0895 at 911.155 kb on - strand, within Dsui_0895 at 911.155 kb on - strand, within Dsui_0895 at 911.182 kb on - strand, within Dsui_0895 at 911.274 kb on - strand, within Dsui_0895 at 911.278 kb on - strand, within Dsui_0895 at 911.331 kb on + strand at 911.331 kb on + strand at 911.373 kb on + strand at 911.380 kb on - strand at 911.398 kb on - strand at 911.405 kb on + strand at 911.405 kb on - strand at 911.410 kb on - strand at 911.413 kb on - strand at 911.420 kb on - strand at 911.551 kb on - strand at 911.628 kb on - strand at 911.638 kb on - strand at 911.735 kb on + strand, within Dsui_0896 at 911.786 kb on + strand at 911.794 kb on - strand at 911.824 kb on + strand, within Dsui_0896 at 911.873 kb on + strand, within Dsui_0896
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 907,276 - -1.5 907,477 + Dsui_0893 0.23 -1.0 907,505 + Dsui_0893 0.26 -3.8 907,510 + Dsui_0893 0.27 -0.3 907,542 + Dsui_0893 0.30 -0.6 907,652 + Dsui_0893 0.40 -0.8 907,665 - -1.1 907,988 - Dsui_0893 0.72 -1.5 908,111 - Dsui_0893 0.84 -1.1 908,111 - Dsui_0893 0.84 -0.6 908,181 + -0.7 908,186 + -1.0 908,237 - -0.5 908,247 - -0.5 908,281 - -2.9 908,342 + -0.2 908,375 + +0.9 908,375 + +0.2 908,383 - -1.1 908,422 - -1.1 908,428 + +0.2 908,428 + -0.5 908,528 + +0.0 908,592 + Dsui_0894 0.12 -0.9 908,649 - Dsui_0894 0.14 -2.1 908,670 + Dsui_0894 0.15 +0.5 908,761 + Dsui_0894 0.19 -0.5 908,849 + Dsui_0894 0.22 -0.5 908,910 + Dsui_0894 0.24 -0.5 908,953 - Dsui_0894 0.26 +0.5 909,014 + Dsui_0894 0.28 +0.5 909,024 + Dsui_0894 0.29 -1.5 909,031 + Dsui_0894 0.29 -1.8 909,039 - Dsui_0894 0.29 -1.1 909,097 - Dsui_0894 0.31 +0.5 909,115 + Dsui_0894 0.32 -0.3 909,115 + Dsui_0894 0.32 -0.5 909,115 + Dsui_0894 0.32 +0.5 909,152 - Dsui_0894 0.33 -1.1 909,179 - +0.5 909,203 - +0.5 909,215 - Dsui_0894 0.36 +0.5 909,237 - Dsui_0894 0.37 +0.5 909,269 - Dsui_0894 0.38 -1.1 909,289 - Dsui_0894 0.39 -2.5 909,336 + Dsui_0894 0.40 -2.8 909,379 - Dsui_0894 0.42 -1.5 909,403 - Dsui_0894 0.43 -1.1 909,405 + Dsui_0894 0.43 -0.5 909,446 + Dsui_0894 0.45 -0.8 909,446 + Dsui_0894 0.45 -1.1 909,492 + Dsui_0894 0.46 +0.5 909,496 - Dsui_0894 0.47 -1.8 909,527 - Dsui_0894 0.48 +0.5 909,610 - Dsui_0894 0.51 +0.5 909,677 - Dsui_0894 0.53 +0.5 909,800 - Dsui_0894 0.58 -0.5 909,824 - Dsui_0894 0.59 +0.5 909,950 + Dsui_0894 0.64 +0.5 910,037 + +0.5 910,046 - Dsui_0894 0.67 +0.5 910,053 + Dsui_0894 0.68 +0.5 910,129 + +0.5 910,171 + Dsui_0894 0.72 -1.1 910,179 - Dsui_0894 0.73 -1.1 910,184 + Dsui_0894 0.73 -0.5 910,235 - +0.5 910,287 + Dsui_0894 0.77 -0.5 910,287 + Dsui_0894 0.77 -1.1 910,357 + Dsui_0894 0.79 -1.5 910,402 + Dsui_0894 0.81 +0.5 910,460 + Dsui_0894 0.83 -1.5 910,512 + Dsui_0894 0.85 -0.5 910,592 - Dsui_0894 0.88 -1.1 910,631 + Dsui_0894 0.90 +0.5 910,631 + Dsui_0894 0.90 +0.5 910,641 + +0.5 910,658 - +0.5 910,667 + -0.5 910,727 - -0.5 910,916 - -0.2 911,155 - Dsui_0895 0.51 -0.3 911,155 - Dsui_0895 0.51 +0.0 911,155 - Dsui_0895 0.51 +0.3 911,182 - Dsui_0895 0.59 +0.7 911,274 - Dsui_0895 0.86 -2.7 911,278 - Dsui_0895 0.87 -0.4 911,331 + -1.5 911,331 + -1.5 911,373 + +0.5 911,380 - +0.4 911,398 - +0.9 911,405 + -0.5 911,405 - -0.7 911,410 - +0.2 911,413 - -0.4 911,420 - -0.6 911,551 - -0.2 911,628 - +0.5 911,638 - -1.5 911,735 + Dsui_0896 0.13 +0.5 911,786 + +0.5 911,794 - +0.5 911,824 + Dsui_0896 0.16 -0.5 911,873 + Dsui_0896 0.17 -1.5
Or see this region's nucleotide sequence