Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0875 and Dsui_0876 overlap by 4 nucleotides Dsui_0876 and Dsui_0877 are separated by 4 nucleotides Dsui_0877 and Dsui_0878 are separated by 322 nucleotides Dsui_0878 and Dsui_0879 are separated by 14 nucleotides
Dsui_0875: Dsui_0875 - putative branched-chain amino acid permease (azaleucine resistance), at 888,437 to 889,180
_0875
Dsui_0876: Dsui_0876 - putative membrane protein, at 889,177 to 889,479
_0876
Dsui_0877: Dsui_0877 - cytochrome c oxidase accessory protein FixG, at 889,484 to 890,863
_0877
Dsui_0878: Dsui_0878 - heme/copper-type cytochrome/quinol oxidase, subunit 3, at 891,186 to 891,821
_0878
Dsui_0879: Dsui_0879 - hypothetical protein, at 891,836 to 892,144
_0879
Position (kb) 889
890
891 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 888.518 kb on + strand, within Dsui_0875 at 888.623 kb on + strand, within Dsui_0875 at 888.646 kb on - strand, within Dsui_0875 at 888.666 kb on - strand at 888.725 kb on + strand, within Dsui_0875 at 888.725 kb on + strand, within Dsui_0875 at 888.725 kb on + strand, within Dsui_0875 at 888.733 kb on - strand, within Dsui_0875 at 888.733 kb on - strand, within Dsui_0875 at 888.733 kb on - strand, within Dsui_0875 at 888.782 kb on - strand, within Dsui_0875 at 888.788 kb on - strand, within Dsui_0875 at 888.793 kb on - strand, within Dsui_0875 at 888.914 kb on - strand, within Dsui_0875 at 889.097 kb on + strand, within Dsui_0875 at 889.100 kb on - strand at 889.102 kb on + strand, within Dsui_0875 at 889.120 kb on - strand at 889.120 kb on - strand at 889.156 kb on + strand at 889.158 kb on + strand at 889.158 kb on + strand at 889.164 kb on - strand at 889.352 kb on - strand at 889.393 kb on + strand, within Dsui_0876 at 889.398 kb on - strand, within Dsui_0876 at 889.432 kb on - strand at 889.475 kb on + strand at 889.539 kb on + strand at 889.540 kb on - strand at 889.604 kb on + strand at 889.610 kb on + strand at 889.638 kb on + strand at 889.653 kb on + strand, within Dsui_0877 at 889.726 kb on + strand at 889.726 kb on + strand, within Dsui_0877 at 889.734 kb on - strand, within Dsui_0877 at 889.828 kb on + strand, within Dsui_0877 at 889.828 kb on + strand, within Dsui_0877 at 889.828 kb on + strand, within Dsui_0877 at 889.846 kb on + strand, within Dsui_0877 at 889.856 kb on + strand, within Dsui_0877 at 889.864 kb on - strand, within Dsui_0877 at 889.917 kb on + strand, within Dsui_0877 at 889.954 kb on + strand, within Dsui_0877 at 890.016 kb on - strand at 890.016 kb on - strand, within Dsui_0877 at 890.098 kb on + strand, within Dsui_0877 at 890.205 kb on + strand at 890.233 kb on + strand at 890.255 kb on + strand, within Dsui_0877 at 890.255 kb on + strand at 890.256 kb on - strand at 890.261 kb on - strand, within Dsui_0877 at 890.263 kb on + strand, within Dsui_0877 at 890.263 kb on + strand, within Dsui_0877 at 890.302 kb on + strand at 890.304 kb on - strand at 890.310 kb on - strand, within Dsui_0877 at 890.310 kb on - strand, within Dsui_0877 at 890.340 kb on + strand, within Dsui_0877 at 890.349 kb on - strand, within Dsui_0877 at 890.360 kb on + strand, within Dsui_0877 at 890.368 kb on - strand, within Dsui_0877 at 890.460 kb on - strand at 890.460 kb on - strand, within Dsui_0877 at 890.466 kb on + strand, within Dsui_0877 at 890.510 kb on + strand, within Dsui_0877 at 890.510 kb on + strand, within Dsui_0877 at 890.510 kb on + strand, within Dsui_0877 at 890.510 kb on + strand, within Dsui_0877 at 890.510 kb on + strand, within Dsui_0877 at 890.510 kb on + strand, within Dsui_0877 at 890.510 kb on + strand, within Dsui_0877 at 890.510 kb on + strand at 890.510 kb on + strand, within Dsui_0877 at 890.518 kb on - strand at 890.518 kb on - strand, within Dsui_0877 at 890.518 kb on - strand, within Dsui_0877 at 890.518 kb on - strand, within Dsui_0877 at 890.518 kb on - strand, within Dsui_0877 at 890.580 kb on - strand, within Dsui_0877 at 890.643 kb on - strand, within Dsui_0877 at 890.660 kb on + strand at 890.670 kb on + strand, within Dsui_0877 at 890.739 kb on + strand at 890.746 kb on + strand at 890.754 kb on - strand at 890.754 kb on - strand at 890.754 kb on - strand at 890.763 kb on + strand at 890.858 kb on + strand at 890.858 kb on - strand at 890.903 kb on - strand at 890.954 kb on - strand at 890.985 kb on + strand at 891.001 kb on + strand at 891.002 kb on + strand at 891.008 kb on + strand at 891.008 kb on - strand at 891.009 kb on - strand at 891.054 kb on - strand at 891.067 kb on + strand at 891.099 kb on - strand at 891.119 kb on + strand at 891.144 kb on + strand at 891.144 kb on + strand at 891.162 kb on - strand at 891.184 kb on + strand at 891.223 kb on + strand at 891.223 kb on + strand at 891.228 kb on + strand at 891.233 kb on + strand at 891.233 kb on + strand at 891.241 kb on - strand at 891.244 kb on + strand at 891.250 kb on + strand, within Dsui_0878 at 891.250 kb on + strand, within Dsui_0878 at 891.250 kb on + strand at 891.250 kb on + strand, within Dsui_0878 at 891.255 kb on + strand, within Dsui_0878 at 891.322 kb on + strand, within Dsui_0878 at 891.332 kb on + strand, within Dsui_0878 at 891.332 kb on + strand, within Dsui_0878 at 891.340 kb on - strand, within Dsui_0878 at 891.377 kb on - strand at 891.388 kb on + strand, within Dsui_0878 at 891.396 kb on - strand, within Dsui_0878 at 891.396 kb on - strand, within Dsui_0878 at 891.574 kb on + strand, within Dsui_0878 at 891.582 kb on - strand at 891.588 kb on - strand, within Dsui_0878 at 891.593 kb on - strand, within Dsui_0878 at 891.624 kb on + strand, within Dsui_0878 at 891.624 kb on + strand, within Dsui_0878 at 891.624 kb on + strand, within Dsui_0878 at 891.624 kb on + strand, within Dsui_0878 at 891.628 kb on + strand, within Dsui_0878 at 891.628 kb on + strand, within Dsui_0878 at 891.632 kb on - strand, within Dsui_0878 at 891.632 kb on - strand at 891.632 kb on - strand, within Dsui_0878 at 891.653 kb on + strand, within Dsui_0878 at 891.661 kb on + strand, within Dsui_0878 at 891.662 kb on - strand, within Dsui_0878 at 891.769 kb on + strand at 891.787 kb on - strand at 891.803 kb on + strand at 891.806 kb on - strand at 891.815 kb on + strand at 891.816 kb on + strand at 891.818 kb on - strand at 891.847 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 888,518 + Dsui_0875 0.11 +0.3 888,623 + Dsui_0875 0.25 -0.4 888,646 - Dsui_0875 0.28 -0.1 888,666 - +0.5 888,725 + Dsui_0875 0.39 -0.0 888,725 + Dsui_0875 0.39 -0.2 888,725 + Dsui_0875 0.39 +0.4 888,733 - Dsui_0875 0.40 -1.5 888,733 - Dsui_0875 0.40 -0.5 888,733 - Dsui_0875 0.40 +0.5 888,782 - Dsui_0875 0.46 -0.5 888,788 - Dsui_0875 0.47 -0.5 888,793 - Dsui_0875 0.48 -0.5 888,914 - Dsui_0875 0.64 +0.5 889,097 + Dsui_0875 0.89 +0.2 889,100 - -0.5 889,102 + Dsui_0875 0.89 +0.5 889,120 - -2.7 889,120 - -0.5 889,156 + -0.0 889,158 + +0.1 889,158 + -0.5 889,164 - +0.5 889,352 - -1.1 889,393 + Dsui_0876 0.71 -0.5 889,398 - Dsui_0876 0.73 -1.5 889,432 - -0.5 889,475 + -0.8 889,539 + -0.5 889,540 - -1.1 889,604 + -2.8 889,610 + -0.5 889,638 + -1.1 889,653 + Dsui_0877 0.12 -2.5 889,726 + +0.5 889,726 + Dsui_0877 0.18 +0.5 889,734 - Dsui_0877 0.18 -1.1 889,828 + Dsui_0877 0.25 -0.5 889,828 + Dsui_0877 0.25 -2.1 889,828 + Dsui_0877 0.25 +0.5 889,846 + Dsui_0877 0.26 -0.5 889,856 + Dsui_0877 0.27 +0.5 889,864 - Dsui_0877 0.28 -1.1 889,917 + Dsui_0877 0.31 -1.5 889,954 + Dsui_0877 0.34 +0.5 890,016 - +0.5 890,016 - Dsui_0877 0.39 -0.5 890,098 + Dsui_0877 0.44 -1.8 890,205 + -0.5 890,233 + +0.5 890,255 + Dsui_0877 0.56 -0.5 890,255 + -1.1 890,256 - +0.5 890,261 - Dsui_0877 0.56 -1.1 890,263 + Dsui_0877 0.56 -0.9 890,263 + Dsui_0877 0.56 -0.1 890,302 + -0.5 890,304 - +0.5 890,310 - Dsui_0877 0.60 +0.5 890,310 - Dsui_0877 0.60 -3.1 890,340 + Dsui_0877 0.62 +0.5 890,349 - Dsui_0877 0.63 +0.5 890,360 + Dsui_0877 0.63 -2.3 890,368 - Dsui_0877 0.64 -1.5 890,460 - +0.5 890,460 - Dsui_0877 0.71 -1.1 890,466 + Dsui_0877 0.71 +0.5 890,510 + Dsui_0877 0.74 -0.5 890,510 + Dsui_0877 0.74 -1.5 890,510 + Dsui_0877 0.74 -0.8 890,510 + Dsui_0877 0.74 +0.5 890,510 + Dsui_0877 0.74 -1.5 890,510 + Dsui_0877 0.74 +0.5 890,510 + Dsui_0877 0.74 +0.5 890,510 + +0.5 890,510 + Dsui_0877 0.74 +0.5 890,518 - +0.5 890,518 - Dsui_0877 0.75 -1.5 890,518 - Dsui_0877 0.75 -0.5 890,518 - Dsui_0877 0.75 +0.5 890,518 - Dsui_0877 0.75 -0.5 890,580 - Dsui_0877 0.79 -1.1 890,643 - Dsui_0877 0.84 +0.5 890,660 + +0.5 890,670 + Dsui_0877 0.86 +0.5 890,739 + -0.5 890,746 + -0.5 890,754 - -2.1 890,754 - +0.5 890,754 - +0.5 890,763 + -0.1 890,858 + -0.5 890,858 - +0.5 890,903 - -1.8 890,954 - -0.5 890,985 + +0.5 891,001 + +0.5 891,002 + +0.5 891,008 + -0.8 891,008 - +0.5 891,009 - +0.5 891,054 - -0.5 891,067 + -2.5 891,099 - -0.5 891,119 + -1.1 891,144 + +0.5 891,144 + +0.5 891,162 - -0.5 891,184 + +0.5 891,223 + +0.5 891,223 + -3.0 891,228 + -0.5 891,233 + -0.1 891,233 + -1.1 891,241 - +0.5 891,244 + -1.1 891,250 + Dsui_0878 0.10 -1.1 891,250 + Dsui_0878 0.10 -0.5 891,250 + -0.5 891,250 + Dsui_0878 0.10 -0.5 891,255 + Dsui_0878 0.11 -1.1 891,322 + Dsui_0878 0.21 -0.5 891,332 + Dsui_0878 0.23 +0.5 891,332 + Dsui_0878 0.23 -1.1 891,340 - Dsui_0878 0.24 -1.8 891,377 - +0.5 891,388 + Dsui_0878 0.32 +0.5 891,396 - Dsui_0878 0.33 +0.5 891,396 - Dsui_0878 0.33 -1.5 891,574 + Dsui_0878 0.61 -1.8 891,582 - +0.5 891,588 - Dsui_0878 0.63 -1.8 891,593 - Dsui_0878 0.64 -1.1 891,624 + Dsui_0878 0.69 -0.5 891,624 + Dsui_0878 0.69 +0.5 891,624 + Dsui_0878 0.69 -1.1 891,624 + Dsui_0878 0.69 -1.1 891,628 + Dsui_0878 0.69 -2.5 891,628 + Dsui_0878 0.69 -1.1 891,632 - Dsui_0878 0.70 +0.5 891,632 - +0.5 891,632 - Dsui_0878 0.70 -1.8 891,653 + Dsui_0878 0.73 +0.5 891,661 + Dsui_0878 0.75 -2.3 891,662 - Dsui_0878 0.75 -0.5 891,769 + +0.5 891,787 - -0.5 891,803 + -0.5 891,806 - +0.5 891,815 + +0.5 891,816 + -0.5 891,818 - +0.5 891,847 + -1.1
Or see this region's nucleotide sequence