Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0865 and Dsui_0866 are separated by 269 nucleotides Dsui_0866 and Dsui_0867 are separated by 176 nucleotides
Dsui_0865: Dsui_0865 - hypothetical protein, at 879,620 to 881,233
_0865
Dsui_0866: Dsui_0866 - hypothetical protein, at 881,503 to 883,098
_0866
Dsui_0867: Dsui_0867 - deoxyguanosinetriphosphate triphosphohydrolase, putative, at 883,275 to 884,651
_0867
Position (kb) 881
882
883
884 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 880.581 kb on + strand, within Dsui_0865 at 880.626 kb on - strand, within Dsui_0865 at 880.632 kb on - strand, within Dsui_0865 at 880.667 kb on - strand, within Dsui_0865 at 880.818 kb on + strand at 880.818 kb on + strand, within Dsui_0865 at 880.818 kb on + strand, within Dsui_0865 at 880.826 kb on - strand, within Dsui_0865 at 880.826 kb on - strand, within Dsui_0865 at 880.826 kb on - strand, within Dsui_0865 at 880.826 kb on - strand, within Dsui_0865 at 880.828 kb on + strand at 880.831 kb on - strand, within Dsui_0865 at 880.836 kb on - strand, within Dsui_0865 at 880.841 kb on - strand at 880.888 kb on - strand at 880.919 kb on + strand, within Dsui_0865 at 880.927 kb on - strand at 880.993 kb on - strand, within Dsui_0865 at 881.012 kb on + strand at 881.051 kb on - strand at 881.125 kb on - strand at 881.146 kb on - strand at 881.401 kb on - strand at 881.525 kb on + strand at 881.574 kb on - strand at 881.638 kb on - strand at 881.745 kb on + strand, within Dsui_0866 at 881.805 kb on + strand, within Dsui_0866 at 881.907 kb on + strand, within Dsui_0866 at 881.907 kb on + strand, within Dsui_0866 at 882.013 kb on - strand, within Dsui_0866 at 882.081 kb on + strand, within Dsui_0866 at 882.169 kb on + strand, within Dsui_0866 at 882.185 kb on - strand, within Dsui_0866 at 882.191 kb on + strand, within Dsui_0866 at 882.444 kb on + strand, within Dsui_0866 at 882.452 kb on - strand, within Dsui_0866 at 882.462 kb on + strand at 882.512 kb on + strand, within Dsui_0866 at 882.520 kb on - strand, within Dsui_0866 at 882.520 kb on - strand at 882.614 kb on - strand, within Dsui_0866 at 882.682 kb on - strand, within Dsui_0866 at 882.799 kb on + strand, within Dsui_0866 at 882.809 kb on - strand, within Dsui_0866 at 882.822 kb on + strand, within Dsui_0866 at 882.859 kb on - strand, within Dsui_0866 at 882.939 kb on - strand at 882.976 kb on + strand at 882.984 kb on - strand at 883.007 kb on + strand at 883.015 kb on - strand at 883.015 kb on - strand at 883.088 kb on - strand at 883.103 kb on + strand at 883.106 kb on + strand at 883.107 kb on + strand at 883.152 kb on - strand at 883.261 kb on + strand at 883.305 kb on - strand at 883.334 kb on + strand at 883.397 kb on + strand at 883.423 kb on + strand, within Dsui_0867 at 883.466 kb on - strand at 883.467 kb on + strand, within Dsui_0867 at 883.475 kb on - strand, within Dsui_0867 at 883.497 kb on - strand, within Dsui_0867 at 883.540 kb on - strand, within Dsui_0867 at 883.543 kb on + strand, within Dsui_0867 at 883.550 kb on - strand at 883.748 kb on + strand, within Dsui_0867 at 883.756 kb on - strand, within Dsui_0867 at 883.843 kb on - strand, within Dsui_0867 at 883.906 kb on + strand, within Dsui_0867 at 883.914 kb on - strand, within Dsui_0867 at 883.914 kb on - strand, within Dsui_0867 at 883.939 kb on - strand at 883.941 kb on + strand, within Dsui_0867 at 883.960 kb on - strand at 883.980 kb on - strand at 884.013 kb on + strand, within Dsui_0867 at 884.035 kb on - strand, within Dsui_0867 at 884.066 kb on - strand, within Dsui_0867
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 880,581 + Dsui_0865 0.60 -2.1 880,626 - Dsui_0865 0.62 -0.6 880,632 - Dsui_0865 0.63 -0.6 880,667 - Dsui_0865 0.65 -1.6 880,818 + +0.4 880,818 + Dsui_0865 0.74 -2.4 880,818 + Dsui_0865 0.74 -1.1 880,826 - Dsui_0865 0.75 -0.6 880,826 - Dsui_0865 0.75 -1.6 880,826 - Dsui_0865 0.75 +0.4 880,826 - Dsui_0865 0.75 +0.4 880,828 + +0.4 880,831 - Dsui_0865 0.75 -0.6 880,836 - Dsui_0865 0.75 -0.6 880,841 - +0.4 880,888 - -1.1 880,919 + Dsui_0865 0.80 -1.6 880,927 - +0.4 880,993 - Dsui_0865 0.85 -1.9 881,012 + -1.1 881,051 - +0.4 881,125 - -0.6 881,146 - +0.4 881,401 - -0.4 881,525 + +0.4 881,574 - +0.4 881,638 - -1.6 881,745 + Dsui_0866 0.15 -3.1 881,805 + Dsui_0866 0.19 -1.6 881,907 + Dsui_0866 0.25 -0.6 881,907 + Dsui_0866 0.25 -3.0 882,013 - Dsui_0866 0.32 -0.9 882,081 + Dsui_0866 0.36 -2.1 882,169 + Dsui_0866 0.42 -1.9 882,185 - Dsui_0866 0.43 -0.1 882,191 + Dsui_0866 0.43 -2.1 882,444 + Dsui_0866 0.59 -0.6 882,452 - Dsui_0866 0.59 -1.6 882,462 + -0.6 882,512 + Dsui_0866 0.63 +0.4 882,520 - Dsui_0866 0.64 -2.9 882,520 - +0.4 882,614 - Dsui_0866 0.70 -0.6 882,682 - Dsui_0866 0.74 +0.4 882,799 + Dsui_0866 0.81 -2.1 882,809 - Dsui_0866 0.82 -1.8 882,822 + Dsui_0866 0.83 -1.6 882,859 - Dsui_0866 0.85 -1.9 882,939 - -0.9 882,976 + -0.6 882,984 - +0.6 883,007 + +0.4 883,015 - +0.3 883,015 - +0.4 883,088 - -0.4 883,103 + +1.0 883,106 + -1.9 883,107 + -2.4 883,152 - -0.3 883,261 + -1.6 883,305 - -1.1 883,334 + +2.2 883,397 + -0.3 883,423 + Dsui_0867 0.11 -0.8 883,466 - +0.4 883,467 + Dsui_0867 0.14 -0.8 883,475 - Dsui_0867 0.15 -0.6 883,497 - Dsui_0867 0.16 -1.6 883,540 - Dsui_0867 0.19 -1.9 883,543 + Dsui_0867 0.19 +0.4 883,550 - +0.4 883,748 + Dsui_0867 0.34 -1.3 883,756 - Dsui_0867 0.35 -0.6 883,843 - Dsui_0867 0.41 +0.4 883,906 + Dsui_0867 0.46 +0.8 883,914 - Dsui_0867 0.46 +0.3 883,914 - Dsui_0867 0.46 +0.3 883,939 - +0.4 883,941 + Dsui_0867 0.48 -1.2 883,960 - +0.4 883,980 - +0.4 884,013 + Dsui_0867 0.54 -0.5 884,035 - Dsui_0867 0.55 -1.6 884,066 - Dsui_0867 0.57 -1.1
Or see this region's nucleotide sequence