Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0864 and Dsui_0865 are separated by 16 nucleotides Dsui_0865 and Dsui_0866 are separated by 269 nucleotides
Dsui_0864: Dsui_0864 - phosphate regulon sensor kinase PhoR, at 878,302 to 879,603
_0864
Dsui_0865: Dsui_0865 - hypothetical protein, at 879,620 to 881,233
_0865
Dsui_0866: Dsui_0866 - hypothetical protein, at 881,503 to 883,098
_0866
Position (kb) 879
880
881
882 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 878.633 kb on + strand, within Dsui_0864 at 878.699 kb on + strand, within Dsui_0864 at 878.777 kb on - strand, within Dsui_0864 at 878.817 kb on + strand, within Dsui_0864 at 878.824 kb on + strand, within Dsui_0864 at 878.824 kb on + strand, within Dsui_0864 at 878.872 kb on - strand, within Dsui_0864 at 878.872 kb on - strand, within Dsui_0864 at 878.891 kb on + strand, within Dsui_0864 at 878.906 kb on - strand, within Dsui_0864 at 878.962 kb on + strand, within Dsui_0864 at 879.041 kb on + strand, within Dsui_0864 at 879.042 kb on - strand, within Dsui_0864 at 879.049 kb on - strand, within Dsui_0864 at 879.061 kb on + strand, within Dsui_0864 at 879.071 kb on - strand, within Dsui_0864 at 879.071 kb on - strand, within Dsui_0864 at 879.086 kb on + strand, within Dsui_0864 at 879.178 kb on - strand, within Dsui_0864 at 879.195 kb on - strand at 879.200 kb on + strand, within Dsui_0864 at 879.260 kb on + strand, within Dsui_0864 at 879.353 kb on + strand, within Dsui_0864 at 879.410 kb on + strand, within Dsui_0864 at 879.419 kb on + strand, within Dsui_0864 at 879.504 kb on + strand at 879.554 kb on - strand at 879.569 kb on - strand at 879.584 kb on - strand at 879.588 kb on + strand at 879.631 kb on + strand at 879.631 kb on + strand at 879.663 kb on + strand at 879.671 kb on - strand at 879.746 kb on + strand at 879.759 kb on - strand at 879.800 kb on + strand, within Dsui_0865 at 879.858 kb on + strand, within Dsui_0865 at 879.888 kb on - strand, within Dsui_0865 at 880.094 kb on - strand, within Dsui_0865 at 880.178 kb on - strand at 880.231 kb on - strand, within Dsui_0865 at 880.286 kb on + strand at 880.333 kb on + strand at 880.402 kb on - strand, within Dsui_0865 at 880.581 kb on + strand, within Dsui_0865 at 880.626 kb on - strand, within Dsui_0865 at 880.632 kb on - strand, within Dsui_0865 at 880.667 kb on - strand, within Dsui_0865 at 880.818 kb on + strand at 880.818 kb on + strand, within Dsui_0865 at 880.818 kb on + strand, within Dsui_0865 at 880.826 kb on - strand, within Dsui_0865 at 880.826 kb on - strand, within Dsui_0865 at 880.826 kb on - strand, within Dsui_0865 at 880.826 kb on - strand, within Dsui_0865 at 880.828 kb on + strand at 880.831 kb on - strand, within Dsui_0865 at 880.836 kb on - strand, within Dsui_0865 at 880.841 kb on - strand at 880.888 kb on - strand at 880.919 kb on + strand, within Dsui_0865 at 880.927 kb on - strand at 880.993 kb on - strand, within Dsui_0865 at 881.012 kb on + strand at 881.051 kb on - strand at 881.125 kb on - strand at 881.146 kb on - strand at 881.401 kb on - strand at 881.525 kb on + strand at 881.574 kb on - strand at 881.638 kb on - strand at 881.745 kb on + strand, within Dsui_0866 at 881.805 kb on + strand, within Dsui_0866 at 881.907 kb on + strand, within Dsui_0866 at 881.907 kb on + strand, within Dsui_0866 at 882.013 kb on - strand, within Dsui_0866 at 882.081 kb on + strand, within Dsui_0866 at 882.169 kb on + strand, within Dsui_0866 at 882.185 kb on - strand, within Dsui_0866 at 882.191 kb on + strand, within Dsui_0866
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 878,633 + Dsui_0864 0.25 -2.0 878,699 + Dsui_0864 0.30 -0.6 878,777 - Dsui_0864 0.36 -0.1 878,817 + Dsui_0864 0.40 -1.6 878,824 + Dsui_0864 0.40 -1.4 878,824 + Dsui_0864 0.40 -1.2 878,872 - Dsui_0864 0.44 -1.1 878,872 - Dsui_0864 0.44 -2.6 878,891 + Dsui_0864 0.45 +0.0 878,906 - Dsui_0864 0.46 +0.4 878,962 + Dsui_0864 0.51 +0.4 879,041 + Dsui_0864 0.57 -1.0 879,042 - Dsui_0864 0.57 -0.6 879,049 - Dsui_0864 0.57 -2.4 879,061 + Dsui_0864 0.58 -1.4 879,071 - Dsui_0864 0.59 -3.5 879,071 - Dsui_0864 0.59 -1.1 879,086 + Dsui_0864 0.60 -0.8 879,178 - Dsui_0864 0.67 -0.6 879,195 - +0.4 879,200 + Dsui_0864 0.69 +0.8 879,260 + Dsui_0864 0.74 -0.5 879,353 + Dsui_0864 0.81 -0.7 879,410 + Dsui_0864 0.85 -0.2 879,419 + Dsui_0864 0.86 -0.2 879,504 + -0.6 879,554 - -1.1 879,569 - -1.9 879,584 - -0.6 879,588 + -0.9 879,631 + -1.1 879,631 + -0.6 879,663 + -1.3 879,671 - +0.4 879,746 + -0.6 879,759 - -0.3 879,800 + Dsui_0865 0.11 +0.4 879,858 + Dsui_0865 0.15 +0.4 879,888 - Dsui_0865 0.17 -1.1 880,094 - Dsui_0865 0.29 -1.6 880,178 - +0.4 880,231 - Dsui_0865 0.38 -1.1 880,286 + -1.1 880,333 + +0.4 880,402 - Dsui_0865 0.48 +0.4 880,581 + Dsui_0865 0.60 -2.1 880,626 - Dsui_0865 0.62 -0.6 880,632 - Dsui_0865 0.63 -0.6 880,667 - Dsui_0865 0.65 -1.6 880,818 + +0.4 880,818 + Dsui_0865 0.74 -2.4 880,818 + Dsui_0865 0.74 -1.1 880,826 - Dsui_0865 0.75 -0.6 880,826 - Dsui_0865 0.75 -1.6 880,826 - Dsui_0865 0.75 +0.4 880,826 - Dsui_0865 0.75 +0.4 880,828 + +0.4 880,831 - Dsui_0865 0.75 -0.6 880,836 - Dsui_0865 0.75 -0.6 880,841 - +0.4 880,888 - -1.1 880,919 + Dsui_0865 0.80 -1.6 880,927 - +0.4 880,993 - Dsui_0865 0.85 -1.9 881,012 + -1.1 881,051 - +0.4 881,125 - -0.6 881,146 - +0.4 881,401 - -0.4 881,525 + +0.4 881,574 - +0.4 881,638 - -1.6 881,745 + Dsui_0866 0.15 -3.1 881,805 + Dsui_0866 0.19 -1.6 881,907 + Dsui_0866 0.25 -0.6 881,907 + Dsui_0866 0.25 -3.0 882,013 - Dsui_0866 0.32 -0.9 882,081 + Dsui_0866 0.36 -2.1 882,169 + Dsui_0866 0.42 -1.9 882,185 - Dsui_0866 0.43 -0.1 882,191 + Dsui_0866 0.43 -2.1
Or see this region's nucleotide sequence