Strain Fitness in Dechlorosoma suillum PS around Dsui_0806

Experiment: ALP with Fusidic 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0805 and Dsui_0806 are separated by 651 nucleotidesDsui_0806 and Dsui_0807 are separated by 99 nucleotides Dsui_0805: Dsui_0805 - primosomal protein N'', at 812,513 to 814,537 _0805 Dsui_0806: Dsui_0806 - uroporphyrinogen decarboxylase, at 815,189 to 816,271 _0806 Dsui_0807: Dsui_0807 - Trk-type K+ transport system, membrane component, at 816,371 to 817,828 _0807 Position (kb) 815 816 817Strain fitness (log2 ratio) -2 -1 0 1 2at 814.583 kb on + strandat 814.584 kb on + strandat 814.584 kb on + strandat 814.608 kb on - strandat 814.659 kb on + strandat 814.671 kb on + strandat 814.683 kb on + strandat 814.683 kb on + strandat 814.683 kb on + strandat 814.683 kb on + strandat 814.683 kb on + strandat 814.683 kb on + strandat 814.683 kb on + strandat 814.686 kb on - strandat 814.691 kb on - strandat 814.691 kb on - strandat 814.691 kb on - strandat 814.691 kb on - strandat 814.691 kb on - strandat 814.691 kb on - strandat 814.695 kb on + strandat 814.703 kb on - strandat 814.706 kb on + strandat 814.740 kb on + strandat 814.748 kb on - strandat 814.794 kb on + strandat 814.830 kb on + strandat 814.831 kb on + strandat 814.831 kb on + strandat 814.838 kb on - strandat 814.842 kb on + strandat 814.851 kb on - strandat 814.874 kb on + strandat 814.926 kb on - strandat 814.954 kb on + strandat 814.962 kb on - strandat 814.962 kb on - strandat 814.976 kb on + strandat 814.980 kb on - strandat 815.002 kb on + strandat 815.010 kb on - strandat 815.021 kb on - strandat 815.038 kb on - strandat 815.043 kb on - strandat 815.043 kb on - strandat 815.128 kb on - strandat 815.128 kb on - strandat 815.171 kb on + strandat 815.181 kb on + strandat 815.182 kb on + strandat 815.189 kb on - strandat 816.326 kb on + strandat 816.326 kb on + strandat 816.447 kb on + strandat 816.458 kb on + strandat 816.475 kb on + strandat 816.478 kb on - strandat 816.544 kb on - strand, within Dsui_0807at 816.592 kb on + strand, within Dsui_0807at 816.623 kb on - strand, within Dsui_0807at 816.640 kb on - strand, within Dsui_0807at 816.640 kb on - strand, within Dsui_0807at 816.640 kb on - strand, within Dsui_0807at 816.719 kb on - strand, within Dsui_0807at 816.729 kb on - strand, within Dsui_0807at 816.751 kb on - strand, within Dsui_0807at 816.779 kb on + strand, within Dsui_0807at 816.819 kb on + strand, within Dsui_0807at 816.819 kb on + strand, within Dsui_0807at 816.837 kb on - strand, within Dsui_0807at 816.849 kb on + strand, within Dsui_0807at 816.856 kb on - strand, within Dsui_0807at 816.857 kb on - strand, within Dsui_0807at 816.857 kb on - strand, within Dsui_0807at 816.861 kb on - strand, within Dsui_0807at 816.864 kb on + strandat 816.876 kb on - strand, within Dsui_0807at 816.906 kb on + strand, within Dsui_0807at 816.911 kb on + strand, within Dsui_0807at 816.914 kb on - strand, within Dsui_0807at 816.914 kb on - strand, within Dsui_0807at 816.914 kb on - strand, within Dsui_0807at 816.919 kb on - strand, within Dsui_0807at 816.929 kb on - strand, within Dsui_0807at 816.932 kb on + strand, within Dsui_0807at 816.963 kb on - strand, within Dsui_0807at 817.017 kb on - strand, within Dsui_0807at 817.036 kb on + strand, within Dsui_0807at 817.038 kb on - strand, within Dsui_0807at 817.066 kb on - strand, within Dsui_0807at 817.080 kb on + strand, within Dsui_0807at 817.080 kb on + strand, within Dsui_0807at 817.081 kb on - strand, within Dsui_0807at 817.085 kb on + strand, within Dsui_0807at 817.085 kb on - strandat 817.098 kb on - strand, within Dsui_0807at 817.125 kb on + strand, within Dsui_0807at 817.141 kb on + strand, within Dsui_0807at 817.171 kb on + strand, within Dsui_0807at 817.179 kb on - strand, within Dsui_0807at 817.179 kb on - strand, within Dsui_0807at 817.179 kb on - strand, within Dsui_0807at 817.221 kb on + strand, within Dsui_0807at 817.229 kb on - strand, within Dsui_0807at 817.234 kb on - strand, within Dsui_0807at 817.261 kb on - strand, within Dsui_0807

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml
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814,583 + -1.5
814,584 + +0.5
814,584 + -0.5
814,608 - -1.1
814,659 + +0.5
814,671 + +0.5
814,683 + -0.5
814,683 + +0.5
814,683 + -1.1
814,683 + +0.5
814,683 + -0.5
814,683 + -1.5
814,683 + +0.5
814,686 - +0.5
814,691 - -0.5
814,691 - -0.5
814,691 - -1.5
814,691 - +0.5
814,691 - +2.1
814,691 - +0.5
814,695 + +0.5
814,703 - -1.1
814,706 + +0.5
814,740 + +0.5
814,748 - +0.5
814,794 + -0.5
814,830 + +0.5
814,831 + -1.1
814,831 + -0.5
814,838 - -1.5
814,842 + +1.7
814,851 - +0.5
814,874 + +1.8
814,926 - -1.0
814,954 + -0.5
814,962 - +0.3
814,962 - +0.6
814,976 + +0.1
814,980 - -0.5
815,002 + +0.3
815,010 - -2.1
815,021 - +2.1
815,038 - +0.0
815,043 - -0.2
815,043 - +0.3
815,128 - +0.0
815,128 - -0.1
815,171 + -0.5
815,181 + -0.4
815,182 + +1.1
815,189 - -0.1
816,326 + -0.0
816,326 + -1.7
816,447 + -0.5
816,458 + -1.5
816,475 + -2.3
816,478 - -1.1
816,544 - Dsui_0807 0.12 +1.1
816,592 + Dsui_0807 0.15 -0.5
816,623 - Dsui_0807 0.17 -0.3
816,640 - Dsui_0807 0.18 +1.1
816,640 - Dsui_0807 0.18 +0.4
816,640 - Dsui_0807 0.18 +0.5
816,719 - Dsui_0807 0.24 -0.2
816,729 - Dsui_0807 0.25 -0.1
816,751 - Dsui_0807 0.26 -0.3
816,779 + Dsui_0807 0.28 +1.2
816,819 + Dsui_0807 0.31 -1.5
816,819 + Dsui_0807 0.31 -1.1
816,837 - Dsui_0807 0.32 -0.2
816,849 + Dsui_0807 0.33 -1.3
816,856 - Dsui_0807 0.33 -0.2
816,857 - Dsui_0807 0.33 +0.4
816,857 - Dsui_0807 0.33 -0.0
816,861 - Dsui_0807 0.34 -1.8
816,864 + +0.5
816,876 - Dsui_0807 0.35 -0.1
816,906 + Dsui_0807 0.37 -1.5
816,911 + Dsui_0807 0.37 +0.8
816,914 - Dsui_0807 0.37 +0.1
816,914 - Dsui_0807 0.37 +1.0
816,914 - Dsui_0807 0.37 +0.3
816,919 - Dsui_0807 0.38 +0.8
816,929 - Dsui_0807 0.38 +0.5
816,932 + Dsui_0807 0.38 +0.5
816,963 - Dsui_0807 0.41 +0.5
817,017 - Dsui_0807 0.44 +0.5
817,036 + Dsui_0807 0.46 +0.0
817,038 - Dsui_0807 0.46 +2.4
817,066 - Dsui_0807 0.48 +0.0
817,080 + Dsui_0807 0.49 -1.1
817,080 + Dsui_0807 0.49 -2.1
817,081 - Dsui_0807 0.49 +0.6
817,085 + Dsui_0807 0.49 +0.5
817,085 - +0.5
817,098 - Dsui_0807 0.50 +0.3
817,125 + Dsui_0807 0.52 -0.5
817,141 + Dsui_0807 0.53 -0.8
817,171 + Dsui_0807 0.55 +1.1
817,179 - Dsui_0807 0.55 -0.1
817,179 - Dsui_0807 0.55 -0.3
817,179 - Dsui_0807 0.55 -2.2
817,221 + Dsui_0807 0.58 +0.5
817,229 - Dsui_0807 0.59 -0.1
817,234 - Dsui_0807 0.59 +2.1
817,261 - Dsui_0807 0.61 +0.4

Or see this region's nucleotide sequence