Strain Fitness in Dechlorosoma suillum PS around Dsui_0729

Experiment: ALP with Fusidic 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0728 and Dsui_0729 are separated by 142 nucleotidesDsui_0729 and Dsui_0730 are separated by 84 nucleotidesDsui_0730 and Dsui_0731 are separated by 18 nucleotides Dsui_0728: Dsui_0728 - threonine ammonia-lyase, biosynthetic, long form, at 722,243 to 723,754 _0728 Dsui_0729: Dsui_0729 - putative autotransporter protein,putative Ig domain-containing protein, at 723,897 to 728,669 _0729 Dsui_0730: Dsui_0730 - microcystin-dependent protein, at 728,754 to 729,293 _0730 Dsui_0731: Dsui_0731 - microcystin-dependent protein, at 729,312 to 729,833 _0731 Position (kb) 723 724 725 726 727 728 729Strain fitness (log2 ratio) -3 -2 -1 0 1at 723.804 kb on - strandat 723.883 kb on - strandat 723.920 kb on + strandat 723.920 kb on + strandat 723.926 kb on + strandat 723.926 kb on + strandat 723.926 kb on + strandat 723.926 kb on + strandat 723.964 kb on + strandat 723.974 kb on + strandat 723.990 kb on - strandat 724.045 kb on - strandat 724.092 kb on + strandat 724.164 kb on + strandat 724.242 kb on - strandat 724.497 kb on - strand, within Dsui_0729at 724.580 kb on - strand, within Dsui_0729at 724.632 kb on - strand, within Dsui_0729at 724.661 kb on - strand, within Dsui_0729at 724.709 kb on - strandat 724.757 kb on - strand, within Dsui_0729at 724.792 kb on - strandat 724.792 kb on - strand, within Dsui_0729at 724.904 kb on + strand, within Dsui_0729at 724.971 kb on + strand, within Dsui_0729at 725.076 kb on + strand, within Dsui_0729at 725.096 kb on + strand, within Dsui_0729at 725.099 kb on - strand, within Dsui_0729at 725.176 kb on - strand, within Dsui_0729at 725.240 kb on + strandat 725.277 kb on - strand, within Dsui_0729at 725.284 kb on - strand, within Dsui_0729at 725.309 kb on - strand, within Dsui_0729at 725.414 kb on + strand, within Dsui_0729at 725.545 kb on - strand, within Dsui_0729at 725.603 kb on + strand, within Dsui_0729at 725.655 kb on + strandat 725.674 kb on - strand, within Dsui_0729at 725.813 kb on - strand, within Dsui_0729at 725.924 kb on - strand, within Dsui_0729at 726.032 kb on - strand, within Dsui_0729at 726.051 kb on + strand, within Dsui_0729at 726.067 kb on - strand, within Dsui_0729at 726.067 kb on - strand, within Dsui_0729at 726.084 kb on + strand, within Dsui_0729at 726.119 kb on + strand, within Dsui_0729at 726.121 kb on + strand, within Dsui_0729at 726.122 kb on - strand, within Dsui_0729at 726.187 kb on + strand, within Dsui_0729at 726.238 kb on - strand, within Dsui_0729at 726.577 kb on - strand, within Dsui_0729at 726.577 kb on - strand, within Dsui_0729at 726.752 kb on - strandat 726.850 kb on - strand, within Dsui_0729at 727.019 kb on + strand, within Dsui_0729at 727.029 kb on - strandat 727.049 kb on - strand, within Dsui_0729at 727.111 kb on + strand, within Dsui_0729at 727.177 kb on + strand, within Dsui_0729at 727.184 kb on - strand, within Dsui_0729at 727.351 kb on + strand, within Dsui_0729at 727.426 kb on - strand, within Dsui_0729at 727.426 kb on - strand, within Dsui_0729at 727.549 kb on - strand, within Dsui_0729at 727.549 kb on - strand, within Dsui_0729at 727.574 kb on + strand, within Dsui_0729at 727.639 kb on - strand, within Dsui_0729at 727.661 kb on + strand, within Dsui_0729at 727.669 kb on - strand, within Dsui_0729at 727.705 kb on - strand, within Dsui_0729at 727.863 kb on - strand, within Dsui_0729at 727.879 kb on - strandat 727.958 kb on + strand, within Dsui_0729at 728.083 kb on - strand, within Dsui_0729at 728.098 kb on - strandat 728.099 kb on - strand, within Dsui_0729at 728.099 kb on - strand, within Dsui_0729at 728.099 kb on - strand, within Dsui_0729at 728.107 kb on - strand, within Dsui_0729at 728.170 kb on + strand, within Dsui_0729at 728.178 kb on - strand, within Dsui_0729at 728.179 kb on - strandat 728.179 kb on - strandat 728.221 kb on + strandat 728.266 kb on + strandat 728.308 kb on + strandat 728.413 kb on - strandat 728.449 kb on + strandat 728.474 kb on + strandat 728.474 kb on + strandat 728.475 kb on + strandat 728.475 kb on + strandat 728.476 kb on - strandat 728.482 kb on - strandat 728.482 kb on - strandat 728.501 kb on + strandat 728.501 kb on + strandat 728.501 kb on + strandat 728.501 kb on + strandat 728.505 kb on + strandat 728.509 kb on - strandat 728.509 kb on - strandat 728.520 kb on + strandat 728.584 kb on - strandat 728.648 kb on + strandat 728.671 kb on + strandat 728.675 kb on + strandat 728.679 kb on - strandat 728.734 kb on + strandat 728.752 kb on + strandat 728.760 kb on - strandat 728.892 kb on + strand, within Dsui_0730at 728.938 kb on + strand, within Dsui_0730at 728.963 kb on + strand, within Dsui_0730at 728.971 kb on - strand, within Dsui_0730at 728.987 kb on + strand, within Dsui_0730at 728.998 kb on + strand, within Dsui_0730at 729.157 kb on + strand, within Dsui_0730at 729.165 kb on - strand, within Dsui_0730at 729.297 kb on - strandat 729.346 kb on - strandat 729.381 kb on + strand, within Dsui_0731at 729.393 kb on + strand, within Dsui_0731at 729.412 kb on - strand, within Dsui_0731at 729.426 kb on + strand, within Dsui_0731at 729.435 kb on + strand, within Dsui_0731at 729.440 kb on + strand, within Dsui_0731at 729.547 kb on - strand, within Dsui_0731at 729.553 kb on + strand, within Dsui_0731at 729.591 kb on - strand, within Dsui_0731at 729.616 kb on - strand, within Dsui_0731at 729.632 kb on - strand, within Dsui_0731at 729.656 kb on - strand, within Dsui_0731at 729.663 kb on - strand, within Dsui_0731

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml
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723,804 - +0.4
723,883 - +0.4
723,920 + -1.2
723,920 + -2.4
723,926 + -0.6
723,926 + +0.4
723,926 + -1.2
723,926 + +0.4
723,964 + +0.4
723,974 + -1.2
723,990 - -1.6
724,045 - +0.4
724,092 + -1.6
724,164 + -0.6
724,242 - -2.2
724,497 - Dsui_0729 0.13 -0.6
724,580 - Dsui_0729 0.14 -1.2
724,632 - Dsui_0729 0.15 -1.2
724,661 - Dsui_0729 0.16 -0.6
724,709 - +0.4
724,757 - Dsui_0729 0.18 -1.9
724,792 - +0.4
724,792 - Dsui_0729 0.19 -1.2
724,904 + Dsui_0729 0.21 +0.4
724,971 + Dsui_0729 0.23 -0.6
725,076 + Dsui_0729 0.25 -0.6
725,096 + Dsui_0729 0.25 +0.4
725,099 - Dsui_0729 0.25 +0.4
725,176 - Dsui_0729 0.27 -0.6
725,240 + +0.4
725,277 - Dsui_0729 0.29 -0.6
725,284 - Dsui_0729 0.29 -1.2
725,309 - Dsui_0729 0.30 -0.6
725,414 + Dsui_0729 0.32 +0.4
725,545 - Dsui_0729 0.35 -2.6
725,603 + Dsui_0729 0.36 +0.4
725,655 + +0.4
725,674 - Dsui_0729 0.37 -1.2
725,813 - Dsui_0729 0.40 +1.4
725,924 - Dsui_0729 0.42 -3.5
726,032 - Dsui_0729 0.45 -0.6
726,051 + Dsui_0729 0.45 +0.4
726,067 - Dsui_0729 0.45 -2.4
726,067 - Dsui_0729 0.45 -1.6
726,084 + Dsui_0729 0.46 -0.6
726,119 + Dsui_0729 0.47 +0.1
726,121 + Dsui_0729 0.47 -3.3
726,122 - Dsui_0729 0.47 -1.2
726,187 + Dsui_0729 0.48 -1.6
726,238 - Dsui_0729 0.49 -1.6
726,577 - Dsui_0729 0.56 -1.2
726,577 - Dsui_0729 0.56 +0.4
726,752 - +0.4
726,850 - Dsui_0729 0.62 -1.2
727,019 + Dsui_0729 0.65 +0.4
727,029 - +0.4
727,049 - Dsui_0729 0.66 +0.4
727,111 + Dsui_0729 0.67 +0.4
727,177 + Dsui_0729 0.69 +0.4
727,184 - Dsui_0729 0.69 -1.2
727,351 + Dsui_0729 0.72 -0.6
727,426 - Dsui_0729 0.74 +0.4
727,426 - Dsui_0729 0.74 -1.2
727,549 - Dsui_0729 0.77 -0.6
727,549 - Dsui_0729 0.77 +0.4
727,574 + Dsui_0729 0.77 -2.4
727,639 - Dsui_0729 0.78 -1.2
727,661 + Dsui_0729 0.79 -0.6
727,669 - Dsui_0729 0.79 -0.6
727,705 - Dsui_0729 0.80 -1.9
727,863 - Dsui_0729 0.83 +0.4
727,879 - +0.4
727,958 + Dsui_0729 0.85 -0.6
728,083 - Dsui_0729 0.88 +0.4
728,098 - +0.4
728,099 - Dsui_0729 0.88 +0.4
728,099 - Dsui_0729 0.88 -1.9
728,099 - Dsui_0729 0.88 -0.6
728,107 - Dsui_0729 0.88 +0.4
728,170 + Dsui_0729 0.90 -0.6
728,178 - Dsui_0729 0.90 -1.9
728,179 - +0.4
728,179 - -0.6
728,221 + +0.4
728,266 + -0.6
728,308 + +0.4
728,413 - -0.6
728,449 + +1.4
728,474 + +0.4
728,474 + +0.4
728,475 + -0.6
728,475 + -1.6
728,476 - +0.4
728,482 - -0.6
728,482 - +0.4
728,501 + -1.2
728,501 + +0.4
728,501 + +0.4
728,501 + -0.6
728,505 + -1.8
728,509 - -1.2
728,509 - -2.2
728,520 + +0.4
728,584 - +0.4
728,648 + +0.4
728,671 + +0.4
728,675 + -0.6
728,679 - -0.6
728,734 + -1.9
728,752 + -0.6
728,760 - -1.2
728,892 + Dsui_0730 0.26 -0.6
728,938 + Dsui_0730 0.34 -2.4
728,963 + Dsui_0730 0.39 +0.4
728,971 - Dsui_0730 0.40 -0.6
728,987 + Dsui_0730 0.43 -1.9
728,998 + Dsui_0730 0.45 +0.4
729,157 + Dsui_0730 0.75 -0.6
729,165 - Dsui_0730 0.76 -0.6
729,297 - +0.4
729,346 - -1.6
729,381 + Dsui_0731 0.13 +0.4
729,393 + Dsui_0731 0.16 -0.6
729,412 - Dsui_0731 0.19 -1.2
729,426 + Dsui_0731 0.22 +0.4
729,435 + Dsui_0731 0.24 -0.6
729,440 + Dsui_0731 0.25 -0.6
729,547 - Dsui_0731 0.45 +0.4
729,553 + Dsui_0731 0.46 +0.4
729,591 - Dsui_0731 0.53 -1.2
729,616 - Dsui_0731 0.58 +0.4
729,632 - Dsui_0731 0.61 -0.6
729,656 - Dsui_0731 0.66 -1.2
729,663 - Dsui_0731 0.67 -1.2

Or see this region's nucleotide sequence