Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0723 and Dsui_0724 are separated by 226 nucleotides Dsui_0724 and Dsui_0725 are separated by 99 nucleotides Dsui_0725 and Dsui_0726 are separated by 2 nucleotides
Dsui_0723: Dsui_0723 - chemotaxis signal transduction protein, at 716,194 to 718,851
_0723
Dsui_0724: Dsui_0724 - ABC-type multidrug transport system, ATPase component, at 719,078 to 720,001
_0724
Dsui_0725: Dsui_0725 - putative hydrolase of the alpha/beta superfamily, at 720,101 to 720,739
_0725
Dsui_0726: Dsui_0726 - ferredoxin, at 720,742 to 721,050
_0726
Position (kb)
719
720
721 Strain fitness (log2 ratio)
-2
-1
0
1 at 718.176 kb on + strand, within Dsui_0723 at 718.185 kb on - strand, within Dsui_0723 at 718.390 kb on + strand, within Dsui_0723 at 718.390 kb on + strand, within Dsui_0723 at 718.398 kb on - strand, within Dsui_0723 at 718.419 kb on + strand, within Dsui_0723 at 718.437 kb on - strand, within Dsui_0723 at 718.460 kb on - strand, within Dsui_0723 at 718.578 kb on - strand at 718.589 kb on - strand at 718.663 kb on + strand at 718.666 kb on - strand at 718.691 kb on - strand at 718.866 kb on - strand at 718.866 kb on - strand at 718.913 kb on - strand at 718.973 kb on - strand at 719.001 kb on + strand at 719.035 kb on + strand at 719.083 kb on + strand at 719.166 kb on - strand at 719.326 kb on + strand, within Dsui_0724 at 719.422 kb on + strand at 719.430 kb on + strand, within Dsui_0724 at 719.430 kb on - strand, within Dsui_0724 at 719.430 kb on - strand, within Dsui_0724 at 719.499 kb on + strand, within Dsui_0724 at 719.499 kb on + strand, within Dsui_0724 at 719.596 kb on - strand, within Dsui_0724 at 719.692 kb on - strand, within Dsui_0724 at 719.851 kb on + strand at 719.980 kb on - strand at 719.999 kb on - strand at 720.138 kb on - strand at 720.207 kb on + strand, within Dsui_0725 at 720.210 kb on - strand, within Dsui_0725 at 720.215 kb on - strand, within Dsui_0725 at 720.215 kb on - strand, within Dsui_0725 at 720.277 kb on - strand, within Dsui_0725 at 720.384 kb on + strand, within Dsui_0725 at 720.461 kb on + strand, within Dsui_0725 at 720.531 kb on - strand, within Dsui_0725 at 720.589 kb on - strand, within Dsui_0725 at 720.664 kb on + strand, within Dsui_0725 at 720.729 kb on - strand at 720.804 kb on + strand at 720.830 kb on - strand, within Dsui_0726 at 720.832 kb on + strand, within Dsui_0726 at 720.845 kb on - strand, within Dsui_0726 at 720.845 kb on - strand, within Dsui_0726 at 720.911 kb on - strand, within Dsui_0726 at 720.958 kb on - strand, within Dsui_0726
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 718,176 + Dsui_0723 0.75 -1.2 718,185 - Dsui_0723 0.75 -0.6 718,390 + Dsui_0723 0.83 -0.6 718,390 + Dsui_0723 0.83 -1.6 718,398 - Dsui_0723 0.83 -0.6 718,419 + Dsui_0723 0.84 -0.6 718,437 - Dsui_0723 0.84 +0.4 718,460 - Dsui_0723 0.85 -0.6 718,578 - +0.4 718,589 - -0.6 718,663 + +0.4 718,666 - -2.6 718,691 - +0.4 718,866 - -0.1 718,866 - -0.7 718,913 - -0.0 718,973 - +0.7 719,001 + +0.4 719,035 + +0.4 719,083 + -0.6 719,166 - +0.1 719,326 + Dsui_0724 0.27 -1.9 719,422 + +0.4 719,430 + Dsui_0724 0.38 -1.6 719,430 - Dsui_0724 0.38 +0.0 719,430 - Dsui_0724 0.38 -0.1 719,499 + Dsui_0724 0.46 +0.4 719,499 + Dsui_0724 0.46 +0.4 719,596 - Dsui_0724 0.56 +0.9 719,692 - Dsui_0724 0.66 +0.3 719,851 + +0.4 719,980 - +0.4 719,999 - +0.7 720,138 - -0.4 720,207 + Dsui_0725 0.17 -0.6 720,210 - Dsui_0725 0.17 -0.1 720,215 - Dsui_0725 0.18 +1.0 720,215 - Dsui_0725 0.18 +0.8 720,277 - Dsui_0725 0.28 +0.2 720,384 + Dsui_0725 0.44 +0.4 720,461 + Dsui_0725 0.56 +0.4 720,531 - Dsui_0725 0.67 +0.4 720,589 - Dsui_0725 0.76 +0.5 720,664 + Dsui_0725 0.88 +0.4 720,729 - +0.3 720,804 + +0.4 720,830 - Dsui_0726 0.28 +0.7 720,832 + Dsui_0726 0.29 -0.6 720,845 - Dsui_0726 0.33 +1.3 720,845 - Dsui_0726 0.33 +0.3 720,911 - Dsui_0726 0.55 +0.1 720,958 - Dsui_0726 0.70 +0.1
Or see this region's nucleotide sequence