Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0666 and Dsui_0667 are separated by 305 nucleotides Dsui_0667 and Dsui_0668 are separated by 186 nucleotides
Dsui_0666: Dsui_0666 - Na+/proline symporter, at 663,434 to 664,936
_0666
Dsui_0667: Dsui_0667 - hypothetical protein, at 665,242 to 665,448
_0667
Dsui_0668: Dsui_0668 - putative membrane protein, at 665,635 to 668,355
_0668
Position (kb) 665
666 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 664.400 kb on + strand, within Dsui_0666 at 664.408 kb on - strand, within Dsui_0666 at 664.527 kb on + strand, within Dsui_0666 at 664.527 kb on + strand at 664.535 kb on - strand, within Dsui_0666 at 664.535 kb on - strand, within Dsui_0666 at 664.612 kb on + strand, within Dsui_0666 at 664.724 kb on + strand, within Dsui_0666 at 664.732 kb on - strand, within Dsui_0666 at 664.919 kb on + strand at 664.919 kb on + strand at 664.937 kb on + strand at 664.984 kb on + strand at 664.984 kb on + strand at 664.989 kb on + strand at 664.989 kb on + strand at 664.992 kb on - strand at 665.027 kb on - strand at 665.086 kb on + strand at 665.086 kb on + strand at 665.086 kb on + strand at 665.087 kb on + strand at 665.087 kb on + strand at 665.092 kb on + strand at 665.094 kb on - strand at 665.094 kb on - strand at 665.094 kb on - strand at 665.095 kb on - strand at 665.095 kb on - strand at 665.097 kb on + strand at 665.097 kb on + strand at 665.097 kb on + strand at 665.100 kb on - strand at 665.105 kb on - strand at 665.105 kb on - strand at 665.105 kb on - strand at 665.110 kb on + strand at 665.118 kb on - strand at 665.134 kb on + strand at 665.134 kb on + strand at 665.142 kb on - strand at 665.148 kb on - strand at 665.266 kb on + strand, within Dsui_0667 at 665.266 kb on + strand at 665.266 kb on + strand, within Dsui_0667 at 665.266 kb on + strand, within Dsui_0667 at 665.313 kb on + strand at 665.313 kb on + strand, within Dsui_0667 at 665.313 kb on + strand, within Dsui_0667 at 665.330 kb on + strand, within Dsui_0667 at 665.333 kb on - strand, within Dsui_0667 at 665.371 kb on - strand, within Dsui_0667 at 665.446 kb on + strand at 665.504 kb on - strand at 665.530 kb on - strand at 665.536 kb on - strand at 665.685 kb on - strand at 665.685 kb on - strand at 665.703 kb on - strand at 665.822 kb on - strand at 666.025 kb on - strand, within Dsui_0668 at 666.025 kb on - strand, within Dsui_0668 at 666.031 kb on - strand, within Dsui_0668 at 666.110 kb on + strand, within Dsui_0668 at 666.118 kb on - strand at 666.133 kb on + strand, within Dsui_0668 at 666.252 kb on - strand, within Dsui_0668 at 666.253 kb on + strand, within Dsui_0668 at 666.283 kb on - strand, within Dsui_0668 at 666.284 kb on - strand, within Dsui_0668 at 666.284 kb on - strand, within Dsui_0668 at 666.314 kb on - strand, within Dsui_0668 at 666.314 kb on - strand, within Dsui_0668 at 666.336 kb on - strand, within Dsui_0668
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 664,400 + Dsui_0666 0.64 -1.6 664,408 - Dsui_0666 0.65 +1.6 664,527 + Dsui_0666 0.73 +0.4 664,527 + +0.4 664,535 - Dsui_0666 0.73 +1.7 664,535 - Dsui_0666 0.73 +1.6 664,612 + Dsui_0666 0.78 -1.2 664,724 + Dsui_0666 0.86 -1.2 664,732 - Dsui_0666 0.86 +1.1 664,919 + +0.4 664,919 + +0.4 664,937 + -0.6 664,984 + -1.2 664,984 + -1.2 664,989 + +0.4 664,989 + -1.2 664,992 - -0.3 665,027 - -0.6 665,086 + +0.4 665,086 + -0.6 665,086 + -0.6 665,087 + +0.4 665,087 + +0.4 665,092 + -0.6 665,094 - -1.6 665,094 - -1.2 665,094 - -1.6 665,095 - -1.2 665,095 - -0.6 665,097 + -3.0 665,097 + -1.2 665,097 + +0.4 665,100 - -1.2 665,105 - -0.6 665,105 - -1.9 665,105 - -0.6 665,110 + +0.4 665,118 - -1.2 665,134 + +0.4 665,134 + -1.6 665,142 - -1.6 665,148 - -0.6 665,266 + Dsui_0667 0.12 -1.9 665,266 + -0.6 665,266 + Dsui_0667 0.12 -0.6 665,266 + Dsui_0667 0.12 +0.4 665,313 + +0.4 665,313 + Dsui_0667 0.34 -0.6 665,313 + Dsui_0667 0.34 -1.2 665,330 + Dsui_0667 0.43 -1.6 665,333 - Dsui_0667 0.44 +0.4 665,371 - Dsui_0667 0.62 -0.6 665,446 + +0.4 665,504 - -0.6 665,530 - +0.4 665,536 - -1.9 665,685 - +0.4 665,685 - +0.4 665,703 - +0.4 665,822 - +0.4 666,025 - Dsui_0668 0.14 -0.6 666,025 - Dsui_0668 0.14 +0.4 666,031 - Dsui_0668 0.15 +0.4 666,110 + Dsui_0668 0.17 -1.2 666,118 - +0.4 666,133 + Dsui_0668 0.18 +0.4 666,252 - Dsui_0668 0.23 -1.9 666,253 + Dsui_0668 0.23 +0.4 666,283 - Dsui_0668 0.24 +0.4 666,284 - Dsui_0668 0.24 -0.6 666,284 - Dsui_0668 0.24 -2.4 666,314 - Dsui_0668 0.25 -0.6 666,314 - Dsui_0668 0.25 +0.4 666,336 - Dsui_0668 0.26 -1.6
Or see this region's nucleotide sequence