Strain Fitness in Dechlorosoma suillum PS around Dsui_0635

Experiment: ALP with Fusidic 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0634 and Dsui_0635 are separated by 99 nucleotidesDsui_0635 and Dsui_0636 are separated by 74 nucleotidesDsui_0636 and Dsui_0637 are separated by 3 nucleotides Dsui_0634: Dsui_0634 - putative permease, DMT superfamily, at 628,475 to 629,386 _0634 Dsui_0635: Dsui_0635 - periplasmic component of amino acid ABC-type transporter/signal transduction system, at 629,486 to 630,385 _0635 Dsui_0636: Dsui_0636 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 630,460 to 631,197 _0636 Dsui_0637: Dsui_0637 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 631,201 to 631,875 _0637 Position (kb) 629 630 631Strain fitness (log2 ratio) -2 -1 0 1at 628.578 kb on - strand, within Dsui_0634at 628.642 kb on + strand, within Dsui_0634at 628.685 kb on - strand, within Dsui_0634at 628.701 kb on + strand, within Dsui_0634at 628.701 kb on + strand, within Dsui_0634at 628.776 kb on - strand, within Dsui_0634at 628.796 kb on + strand, within Dsui_0634at 628.806 kb on + strand, within Dsui_0634at 628.819 kb on - strand, within Dsui_0634at 628.845 kb on - strand, within Dsui_0634at 628.982 kb on + strand, within Dsui_0634at 628.987 kb on + strand, within Dsui_0634at 628.990 kb on - strand, within Dsui_0634at 628.990 kb on - strand, within Dsui_0634at 629.188 kb on - strand, within Dsui_0634at 629.359 kb on - strandat 629.386 kb on + strandat 629.412 kb on - strandat 629.462 kb on + strandat 629.467 kb on + strandat 629.503 kb on - strandat 629.503 kb on - strandat 629.552 kb on - strandat 629.571 kb on + strandat 629.579 kb on - strand, within Dsui_0635at 629.598 kb on + strand, within Dsui_0635at 629.604 kb on + strand, within Dsui_0635at 629.611 kb on - strand, within Dsui_0635at 629.679 kb on + strand, within Dsui_0635at 629.728 kb on - strand, within Dsui_0635at 629.792 kb on + strand, within Dsui_0635at 629.806 kb on - strandat 629.808 kb on - strand, within Dsui_0635at 629.896 kb on + strand, within Dsui_0635at 630.095 kb on + strand, within Dsui_0635at 630.108 kb on - strand, within Dsui_0635at 630.121 kb on + strand, within Dsui_0635at 630.121 kb on + strand, within Dsui_0635at 630.135 kb on - strand, within Dsui_0635at 630.171 kb on - strand, within Dsui_0635at 630.173 kb on + strand, within Dsui_0635at 630.173 kb on + strand, within Dsui_0635at 630.230 kb on + strand, within Dsui_0635at 630.241 kb on + strand, within Dsui_0635at 630.257 kb on - strand, within Dsui_0635at 630.276 kb on - strand, within Dsui_0635at 630.382 kb on - strandat 630.494 kb on + strandat 630.494 kb on + strandat 630.497 kb on - strandat 630.529 kb on - strandat 630.531 kb on + strandat 630.531 kb on + strandat 630.554 kb on - strand, within Dsui_0636at 630.554 kb on - strand, within Dsui_0636at 630.599 kb on - strand, within Dsui_0636at 630.663 kb on + strand, within Dsui_0636at 630.671 kb on - strand, within Dsui_0636at 630.688 kb on + strand, within Dsui_0636at 630.745 kb on - strand, within Dsui_0636at 630.809 kb on - strand, within Dsui_0636at 630.814 kb on - strand, within Dsui_0636at 630.814 kb on - strand, within Dsui_0636at 630.816 kb on + strand, within Dsui_0636at 630.874 kb on + strand, within Dsui_0636at 630.895 kb on + strand, within Dsui_0636at 630.915 kb on - strand, within Dsui_0636at 630.927 kb on - strand, within Dsui_0636at 631.080 kb on - strand, within Dsui_0636at 631.085 kb on - strand, within Dsui_0636at 631.097 kb on + strand, within Dsui_0636at 631.126 kb on - strandat 631.186 kb on - strandat 631.268 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml
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628,578 - Dsui_0634 0.11 +0.4
628,642 + Dsui_0634 0.18 -0.8
628,685 - Dsui_0634 0.23 +0.4
628,701 + Dsui_0634 0.25 -0.6
628,701 + Dsui_0634 0.25 +0.4
628,776 - Dsui_0634 0.33 -2.4
628,796 + Dsui_0634 0.35 -0.1
628,806 + Dsui_0634 0.36 -0.6
628,819 - Dsui_0634 0.38 +0.4
628,845 - Dsui_0634 0.41 -1.6
628,982 + Dsui_0634 0.56 +0.4
628,987 + Dsui_0634 0.56 -2.1
628,990 - Dsui_0634 0.56 -2.1
628,990 - Dsui_0634 0.56 -0.6
629,188 - Dsui_0634 0.78 -1.6
629,359 - -1.6
629,386 + -0.6
629,412 - -1.6
629,462 + -0.2
629,467 + -0.5
629,503 - -1.4
629,503 - -1.9
629,552 - +0.4
629,571 + +0.6
629,579 - Dsui_0635 0.10 +0.4
629,598 + Dsui_0635 0.12 -0.4
629,604 + Dsui_0635 0.13 -0.0
629,611 - Dsui_0635 0.14 -0.6
629,679 + Dsui_0635 0.21 -2.4
629,728 - Dsui_0635 0.27 +0.4
629,792 + Dsui_0635 0.34 -0.7
629,806 - +0.4
629,808 - Dsui_0635 0.36 -2.6
629,896 + Dsui_0635 0.46 -0.2
630,095 + Dsui_0635 0.68 -0.2
630,108 - Dsui_0635 0.69 -2.2
630,121 + Dsui_0635 0.71 -0.5
630,121 + Dsui_0635 0.71 -0.6
630,135 - Dsui_0635 0.72 +0.4
630,171 - Dsui_0635 0.76 -1.2
630,173 + Dsui_0635 0.76 -1.3
630,173 + Dsui_0635 0.76 -0.4
630,230 + Dsui_0635 0.83 -1.4
630,241 + Dsui_0635 0.84 -0.8
630,257 - Dsui_0635 0.86 +0.4
630,276 - Dsui_0635 0.88 -0.4
630,382 - +0.4
630,494 + -0.4
630,494 + -0.2
630,497 - +0.4
630,529 - -0.6
630,531 + +0.1
630,531 + +0.3
630,554 - Dsui_0636 0.13 +0.4
630,554 - Dsui_0636 0.13 +0.4
630,599 - Dsui_0636 0.19 -0.6
630,663 + Dsui_0636 0.28 -0.7
630,671 - Dsui_0636 0.29 -0.6
630,688 + Dsui_0636 0.31 -1.2
630,745 - Dsui_0636 0.39 -1.2
630,809 - Dsui_0636 0.47 +0.4
630,814 - Dsui_0636 0.48 +0.4
630,814 - Dsui_0636 0.48 -0.6
630,816 + Dsui_0636 0.48 +0.3
630,874 + Dsui_0636 0.56 -0.7
630,895 + Dsui_0636 0.59 -0.1
630,915 - Dsui_0636 0.62 -2.7
630,927 - Dsui_0636 0.63 +0.8
631,080 - Dsui_0636 0.84 -1.9
631,085 - Dsui_0636 0.85 -0.6
631,097 + Dsui_0636 0.86 -0.8
631,126 - -1.2
631,186 - -2.1
631,268 + -0.6

Or see this region's nucleotide sequence