Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0633 and Dsui_0634 are separated by 105 nucleotides Dsui_0634 and Dsui_0635 are separated by 99 nucleotides
Dsui_0633: Dsui_0633 - transcriptional regulator, at 627,464 to 628,369
_0633
Dsui_0634: Dsui_0634 - putative permease, DMT superfamily, at 628,475 to 629,386
_0634
Dsui_0635: Dsui_0635 - periplasmic component of amino acid ABC-type transporter/signal transduction system, at 629,486 to 630,385
_0635
Position (kb) 628
629
630 Strain fitness (log2 ratio) -2
-1
0
1 at 627.497 kb on - strand at 627.627 kb on - strand, within Dsui_0633 at 627.673 kb on - strand, within Dsui_0633 at 627.741 kb on - strand, within Dsui_0633 at 627.883 kb on - strand, within Dsui_0633 at 627.943 kb on - strand, within Dsui_0633 at 627.988 kb on + strand, within Dsui_0633 at 627.996 kb on - strand, within Dsui_0633 at 627.996 kb on - strand, within Dsui_0633 at 627.996 kb on - strand, within Dsui_0633 at 627.999 kb on + strand, within Dsui_0633 at 628.004 kb on + strand, within Dsui_0633 at 628.012 kb on - strand, within Dsui_0633 at 628.012 kb on - strand, within Dsui_0633 at 628.075 kb on - strand, within Dsui_0633 at 628.135 kb on + strand, within Dsui_0633 at 628.215 kb on + strand, within Dsui_0633 at 628.340 kb on - strand at 628.578 kb on - strand, within Dsui_0634 at 628.642 kb on + strand, within Dsui_0634 at 628.685 kb on - strand, within Dsui_0634 at 628.701 kb on + strand, within Dsui_0634 at 628.701 kb on + strand, within Dsui_0634 at 628.776 kb on - strand, within Dsui_0634 at 628.796 kb on + strand, within Dsui_0634 at 628.806 kb on + strand, within Dsui_0634 at 628.819 kb on - strand, within Dsui_0634 at 628.845 kb on - strand, within Dsui_0634 at 628.982 kb on + strand, within Dsui_0634 at 628.987 kb on + strand, within Dsui_0634 at 628.990 kb on - strand, within Dsui_0634 at 628.990 kb on - strand, within Dsui_0634 at 629.188 kb on - strand, within Dsui_0634 at 629.359 kb on - strand at 629.386 kb on + strand at 629.412 kb on - strand at 629.462 kb on + strand at 629.467 kb on + strand at 629.503 kb on - strand at 629.503 kb on - strand at 629.552 kb on - strand at 629.571 kb on + strand at 629.579 kb on - strand, within Dsui_0635 at 629.598 kb on + strand, within Dsui_0635 at 629.604 kb on + strand, within Dsui_0635 at 629.611 kb on - strand, within Dsui_0635 at 629.679 kb on + strand, within Dsui_0635 at 629.728 kb on - strand, within Dsui_0635 at 629.792 kb on + strand, within Dsui_0635 at 629.806 kb on - strand at 629.808 kb on - strand, within Dsui_0635 at 629.896 kb on + strand, within Dsui_0635 at 630.095 kb on + strand, within Dsui_0635 at 630.108 kb on - strand, within Dsui_0635 at 630.121 kb on + strand, within Dsui_0635 at 630.121 kb on + strand, within Dsui_0635 at 630.135 kb on - strand, within Dsui_0635 at 630.171 kb on - strand, within Dsui_0635 at 630.173 kb on + strand, within Dsui_0635 at 630.173 kb on + strand, within Dsui_0635 at 630.230 kb on + strand, within Dsui_0635 at 630.241 kb on + strand, within Dsui_0635 at 630.257 kb on - strand, within Dsui_0635 at 630.276 kb on - strand, within Dsui_0635 at 630.382 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 627,497 - +0.6 627,627 - Dsui_0633 0.18 +0.7 627,673 - Dsui_0633 0.23 +0.1 627,741 - Dsui_0633 0.31 -0.4 627,883 - Dsui_0633 0.46 -0.1 627,943 - Dsui_0633 0.53 -0.5 627,988 + Dsui_0633 0.58 +0.4 627,996 - Dsui_0633 0.59 +0.8 627,996 - Dsui_0633 0.59 +1.2 627,996 - Dsui_0633 0.59 +0.1 627,999 + Dsui_0633 0.59 -1.1 628,004 + Dsui_0633 0.60 +0.4 628,012 - Dsui_0633 0.60 +0.4 628,012 - Dsui_0633 0.60 -0.1 628,075 - Dsui_0633 0.67 -0.1 628,135 + Dsui_0633 0.74 +0.4 628,215 + Dsui_0633 0.83 -0.6 628,340 - +0.1 628,578 - Dsui_0634 0.11 +0.4 628,642 + Dsui_0634 0.18 -0.8 628,685 - Dsui_0634 0.23 +0.4 628,701 + Dsui_0634 0.25 -0.6 628,701 + Dsui_0634 0.25 +0.4 628,776 - Dsui_0634 0.33 -2.4 628,796 + Dsui_0634 0.35 -0.1 628,806 + Dsui_0634 0.36 -0.6 628,819 - Dsui_0634 0.38 +0.4 628,845 - Dsui_0634 0.41 -1.6 628,982 + Dsui_0634 0.56 +0.4 628,987 + Dsui_0634 0.56 -2.1 628,990 - Dsui_0634 0.56 -2.1 628,990 - Dsui_0634 0.56 -0.6 629,188 - Dsui_0634 0.78 -1.6 629,359 - -1.6 629,386 + -0.6 629,412 - -1.6 629,462 + -0.2 629,467 + -0.5 629,503 - -1.4 629,503 - -1.9 629,552 - +0.4 629,571 + +0.6 629,579 - Dsui_0635 0.10 +0.4 629,598 + Dsui_0635 0.12 -0.4 629,604 + Dsui_0635 0.13 -0.0 629,611 - Dsui_0635 0.14 -0.6 629,679 + Dsui_0635 0.21 -2.4 629,728 - Dsui_0635 0.27 +0.4 629,792 + Dsui_0635 0.34 -0.7 629,806 - +0.4 629,808 - Dsui_0635 0.36 -2.6 629,896 + Dsui_0635 0.46 -0.2 630,095 + Dsui_0635 0.68 -0.2 630,108 - Dsui_0635 0.69 -2.2 630,121 + Dsui_0635 0.71 -0.5 630,121 + Dsui_0635 0.71 -0.6 630,135 - Dsui_0635 0.72 +0.4 630,171 - Dsui_0635 0.76 -1.2 630,173 + Dsui_0635 0.76 -1.3 630,173 + Dsui_0635 0.76 -0.4 630,230 + Dsui_0635 0.83 -1.4 630,241 + Dsui_0635 0.84 -0.8 630,257 - Dsui_0635 0.86 +0.4 630,276 - Dsui_0635 0.88 -0.4 630,382 - +0.4
Or see this region's nucleotide sequence