Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0626 and Dsui_0627 overlap by 8 nucleotides Dsui_0627 and Dsui_0628 overlap by 1 nucleotides Dsui_0628 and Dsui_0629 overlap by 4 nucleotides Dsui_0629 and Dsui_0630 are separated by 72 nucleotides
Dsui_0626: Dsui_0626 - ABC-type branched-chain amino acid transport systems, ATPase component, at 619,927 to 620,643
_0626
Dsui_0627: Dsui_0627 - ABC-type branched-chain amino acid transport systems, ATPase component, at 620,636 to 621,439
_0627
Dsui_0628: Dsui_0628 - ABC-type branched-chain amino acid transport system, permease component, at 621,439 to 622,515
_0628
Dsui_0629: Dsui_0629 - branched-chain amino acid ABC-type transport system, permease component, at 622,512 to 623,435
_0629
Dsui_0630: Dsui_0630 - ABC-type branched-chain amino acid transport system, periplasmic component, at 623,508 to 624,812
_0630
Position (kb) 621
622
623 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 620.496 kb on - strand, within Dsui_0626 at 620.502 kb on + strand, within Dsui_0626 at 620.639 kb on + strand at 620.642 kb on - strand at 620.820 kb on + strand at 620.972 kb on - strand, within Dsui_0627 at 620.972 kb on - strand, within Dsui_0627 at 621.116 kb on - strand, within Dsui_0627 at 621.229 kb on + strand, within Dsui_0627 at 621.375 kb on + strand at 621.383 kb on - strand at 621.617 kb on + strand, within Dsui_0628 at 621.617 kb on + strand, within Dsui_0628 at 621.639 kb on - strand, within Dsui_0628 at 621.689 kb on + strand, within Dsui_0628 at 621.828 kb on + strand, within Dsui_0628 at 621.858 kb on + strand, within Dsui_0628 at 622.029 kb on + strand, within Dsui_0628 at 622.166 kb on + strand, within Dsui_0628 at 622.261 kb on + strand at 622.278 kb on + strand, within Dsui_0628 at 622.301 kb on - strand, within Dsui_0628 at 622.413 kb on + strand at 622.501 kb on - strand at 622.510 kb on + strand at 622.510 kb on + strand at 622.511 kb on - strand at 622.595 kb on + strand at 622.676 kb on - strand, within Dsui_0629 at 622.857 kb on + strand, within Dsui_0629 at 622.880 kb on - strand, within Dsui_0629 at 622.920 kb on + strand, within Dsui_0629 at 622.928 kb on - strand, within Dsui_0629 at 623.013 kb on + strand, within Dsui_0629 at 623.057 kb on + strand, within Dsui_0629 at 623.132 kb on - strand at 623.280 kb on + strand, within Dsui_0629 at 623.285 kb on + strand, within Dsui_0629 at 623.344 kb on - strand at 623.372 kb on - strand at 623.396 kb on + strand at 623.396 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 620,496 - Dsui_0626 0.79 +0.8 620,502 + Dsui_0626 0.80 -0.6 620,639 + -1.2 620,642 - +0.6 620,820 + +0.4 620,972 - Dsui_0627 0.42 +0.4 620,972 - Dsui_0627 0.42 -0.2 621,116 - Dsui_0627 0.60 -0.0 621,229 + Dsui_0627 0.74 -0.6 621,375 + -2.7 621,383 - -0.2 621,617 + Dsui_0628 0.17 +0.4 621,617 + Dsui_0628 0.17 +0.4 621,639 - Dsui_0628 0.19 +0.4 621,689 + Dsui_0628 0.23 -3.0 621,828 + Dsui_0628 0.36 +0.4 621,858 + Dsui_0628 0.39 -0.6 622,029 + Dsui_0628 0.55 -0.6 622,166 + Dsui_0628 0.68 -1.6 622,261 + +0.4 622,278 + Dsui_0628 0.78 -1.1 622,301 - Dsui_0628 0.80 +0.3 622,413 + -0.6 622,501 - +0.5 622,510 + +0.4 622,510 + -0.6 622,511 - -0.1 622,595 + +0.4 622,676 - Dsui_0629 0.18 +1.2 622,857 + Dsui_0629 0.37 -0.9 622,880 - Dsui_0629 0.40 +0.1 622,920 + Dsui_0629 0.44 -0.6 622,928 - Dsui_0629 0.45 -0.9 623,013 + Dsui_0629 0.54 -0.6 623,057 + Dsui_0629 0.59 -0.6 623,132 - -1.6 623,280 + Dsui_0629 0.83 -3.0 623,285 + Dsui_0629 0.84 +0.4 623,344 - -0.3 623,372 - +0.9 623,396 + -1.2 623,396 + -1.9
Or see this region's nucleotide sequence