Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0610 and Dsui_0611 are separated by 59 nucleotides Dsui_0611 and Dsui_0612 are separated by 315 nucleotides Dsui_0612 and Dsui_0613 are separated by 242 nucleotides
Dsui_0610: Dsui_0610 - putative signal transduction protein containing EAL and modified HD-GYP domains, at 604,844 to 606,016
_0610
Dsui_0611: Dsui_0611 - phosphotransferase system cellobiose-specific component IIC, at 606,076 to 608,163
_0611
Dsui_0612: Dsui_0612 - hypothetical protein, at 608,479 to 608,775
_0612
Dsui_0613: Dsui_0613 - uncharacterized protein SCO1/SenC/PrrC, at 609,018 to 609,569
_0613
Position (kb) 606
607
608
609 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 605.147 kb on + strand, within Dsui_0610 at 605.155 kb on - strand, within Dsui_0610 at 605.186 kb on + strand, within Dsui_0610 at 605.194 kb on - strand, within Dsui_0610 at 605.220 kb on + strand, within Dsui_0610 at 605.228 kb on - strand, within Dsui_0610 at 605.235 kb on + strand, within Dsui_0610 at 605.243 kb on - strand, within Dsui_0610 at 605.415 kb on + strand, within Dsui_0610 at 605.427 kb on + strand, within Dsui_0610 at 605.650 kb on + strand, within Dsui_0610 at 605.691 kb on - strand, within Dsui_0610 at 605.771 kb on - strand, within Dsui_0610 at 605.778 kb on + strand, within Dsui_0610 at 605.786 kb on - strand, within Dsui_0610 at 605.796 kb on + strand, within Dsui_0610 at 605.916 kb on + strand at 605.987 kb on + strand at 606.036 kb on + strand at 606.041 kb on + strand at 606.193 kb on - strand at 606.198 kb on - strand at 606.199 kb on - strand at 606.256 kb on + strand at 606.301 kb on + strand, within Dsui_0611 at 606.510 kb on + strand, within Dsui_0611 at 606.532 kb on - strand, within Dsui_0611 at 606.590 kb on - strand at 606.597 kb on - strand, within Dsui_0611 at 606.637 kb on + strand, within Dsui_0611 at 606.671 kb on - strand, within Dsui_0611 at 606.790 kb on - strand, within Dsui_0611 at 606.869 kb on - strand, within Dsui_0611 at 607.091 kb on + strand, within Dsui_0611 at 607.301 kb on - strand, within Dsui_0611 at 607.452 kb on + strand at 607.456 kb on - strand, within Dsui_0611 at 607.535 kb on - strand, within Dsui_0611 at 607.573 kb on + strand, within Dsui_0611 at 607.708 kb on - strand, within Dsui_0611 at 607.743 kb on - strand, within Dsui_0611 at 607.782 kb on + strand, within Dsui_0611 at 607.845 kb on + strand, within Dsui_0611 at 607.956 kb on - strand at 608.028 kb on + strand at 608.043 kb on + strand at 608.082 kb on + strand at 608.090 kb on - strand at 608.175 kb on - strand at 608.213 kb on + strand at 608.213 kb on + strand at 608.221 kb on - strand at 608.334 kb on + strand at 608.460 kb on + strand at 608.478 kb on - strand at 608.478 kb on - strand at 608.976 kb on + strand at 609.066 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 605,147 + Dsui_0610 0.26 +0.2 605,155 - Dsui_0610 0.27 -0.6 605,186 + Dsui_0610 0.29 +0.3 605,194 - Dsui_0610 0.30 -1.4 605,220 + Dsui_0610 0.32 -0.1 605,228 - Dsui_0610 0.33 -1.4 605,235 + Dsui_0610 0.33 -0.2 605,243 - Dsui_0610 0.34 +0.4 605,415 + Dsui_0610 0.49 -0.1 605,427 + Dsui_0610 0.50 -0.4 605,650 + Dsui_0610 0.69 -0.3 605,691 - Dsui_0610 0.72 +0.4 605,771 - Dsui_0610 0.79 -0.6 605,778 + Dsui_0610 0.80 -0.2 605,786 - Dsui_0610 0.80 -1.2 605,796 + Dsui_0610 0.81 -0.6 605,916 + +0.3 605,987 + -0.2 606,036 + +0.7 606,041 + +0.0 606,193 - -3.3 606,198 - -1.2 606,199 - -1.9 606,256 + -1.9 606,301 + Dsui_0611 0.11 +0.4 606,510 + Dsui_0611 0.21 -0.6 606,532 - Dsui_0611 0.22 +1.4 606,590 - +0.4 606,597 - Dsui_0611 0.25 -0.6 606,637 + Dsui_0611 0.27 -1.2 606,671 - Dsui_0611 0.28 +0.0 606,790 - Dsui_0611 0.34 +0.4 606,869 - Dsui_0611 0.38 +0.4 607,091 + Dsui_0611 0.49 +0.4 607,301 - Dsui_0611 0.59 -1.6 607,452 + +0.4 607,456 - Dsui_0611 0.66 -1.2 607,535 - Dsui_0611 0.70 -1.2 607,573 + Dsui_0611 0.72 -0.6 607,708 - Dsui_0611 0.78 -0.6 607,743 - Dsui_0611 0.80 -1.2 607,782 + Dsui_0611 0.82 -1.6 607,845 + Dsui_0611 0.85 -0.6 607,956 - -1.2 608,028 + -1.9 608,043 + -1.2 608,082 + -1.6 608,090 - -1.2 608,175 - -1.0 608,213 + +0.4 608,213 + -0.6 608,221 - -1.9 608,334 + -1.2 608,460 + -2.2 608,478 - +0.4 608,478 - -3.8 608,976 + -0.0 609,066 - +0.4
Or see this region's nucleotide sequence