Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0609 and Dsui_0610 are separated by 21 nucleotides Dsui_0610 and Dsui_0611 are separated by 59 nucleotides
Dsui_0609: Dsui_0609 - 2-polyprenylphenol hydroxylase-like oxidoreductase, at 603,809 to 604,822
_0609
Dsui_0610: Dsui_0610 - putative signal transduction protein containing EAL and modified HD-GYP domains, at 604,844 to 606,016
_0610
Dsui_0611: Dsui_0611 - phosphotransferase system cellobiose-specific component IIC, at 606,076 to 608,163
_0611
Position (kb) 604
605
606
607 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 603.891 kb on + strand at 603.896 kb on + strand at 603.896 kb on + strand at 604.048 kb on + strand, within Dsui_0609 at 604.048 kb on + strand, within Dsui_0609 at 604.056 kb on - strand, within Dsui_0609 at 604.056 kb on - strand at 604.056 kb on - strand, within Dsui_0609 at 604.066 kb on - strand, within Dsui_0609 at 604.105 kb on + strand, within Dsui_0609 at 604.113 kb on - strand, within Dsui_0609 at 604.305 kb on + strand, within Dsui_0609 at 604.383 kb on - strand, within Dsui_0609 at 604.393 kb on - strand, within Dsui_0609 at 604.403 kb on - strand, within Dsui_0609 at 604.420 kb on - strand, within Dsui_0609 at 604.433 kb on - strand, within Dsui_0609 at 604.501 kb on - strand, within Dsui_0609 at 604.515 kb on - strand, within Dsui_0609 at 604.708 kb on + strand, within Dsui_0609 at 604.735 kb on + strand at 604.873 kb on + strand at 604.913 kb on - strand at 605.000 kb on + strand, within Dsui_0610 at 605.147 kb on + strand, within Dsui_0610 at 605.155 kb on - strand, within Dsui_0610 at 605.186 kb on + strand, within Dsui_0610 at 605.194 kb on - strand, within Dsui_0610 at 605.220 kb on + strand, within Dsui_0610 at 605.228 kb on - strand, within Dsui_0610 at 605.235 kb on + strand, within Dsui_0610 at 605.243 kb on - strand, within Dsui_0610 at 605.415 kb on + strand, within Dsui_0610 at 605.427 kb on + strand, within Dsui_0610 at 605.650 kb on + strand, within Dsui_0610 at 605.691 kb on - strand, within Dsui_0610 at 605.771 kb on - strand, within Dsui_0610 at 605.778 kb on + strand, within Dsui_0610 at 605.786 kb on - strand, within Dsui_0610 at 605.796 kb on + strand, within Dsui_0610 at 605.916 kb on + strand at 605.987 kb on + strand at 606.036 kb on + strand at 606.041 kb on + strand at 606.193 kb on - strand at 606.198 kb on - strand at 606.199 kb on - strand at 606.256 kb on + strand at 606.301 kb on + strand, within Dsui_0611 at 606.510 kb on + strand, within Dsui_0611 at 606.532 kb on - strand, within Dsui_0611 at 606.590 kb on - strand at 606.597 kb on - strand, within Dsui_0611 at 606.637 kb on + strand, within Dsui_0611 at 606.671 kb on - strand, within Dsui_0611 at 606.790 kb on - strand, within Dsui_0611 at 606.869 kb on - strand, within Dsui_0611
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 603,891 + -0.0 603,896 + -1.8 603,896 + -0.4 604,048 + Dsui_0609 0.24 -0.3 604,048 + Dsui_0609 0.24 +0.8 604,056 - Dsui_0609 0.24 -1.2 604,056 - +0.4 604,056 - Dsui_0609 0.24 +0.4 604,066 - Dsui_0609 0.25 -2.2 604,105 + Dsui_0609 0.29 +0.1 604,113 - Dsui_0609 0.30 +1.0 604,305 + Dsui_0609 0.49 -0.0 604,383 - Dsui_0609 0.57 -0.6 604,393 - Dsui_0609 0.58 +0.4 604,403 - Dsui_0609 0.59 -0.6 604,420 - Dsui_0609 0.60 +0.4 604,433 - Dsui_0609 0.62 -3.4 604,501 - Dsui_0609 0.68 -0.6 604,515 - Dsui_0609 0.70 +0.4 604,708 + Dsui_0609 0.89 -1.8 604,735 + -0.7 604,873 + -0.2 604,913 - -1.2 605,000 + Dsui_0610 0.13 +0.8 605,147 + Dsui_0610 0.26 +0.2 605,155 - Dsui_0610 0.27 -0.6 605,186 + Dsui_0610 0.29 +0.3 605,194 - Dsui_0610 0.30 -1.4 605,220 + Dsui_0610 0.32 -0.1 605,228 - Dsui_0610 0.33 -1.4 605,235 + Dsui_0610 0.33 -0.2 605,243 - Dsui_0610 0.34 +0.4 605,415 + Dsui_0610 0.49 -0.1 605,427 + Dsui_0610 0.50 -0.4 605,650 + Dsui_0610 0.69 -0.3 605,691 - Dsui_0610 0.72 +0.4 605,771 - Dsui_0610 0.79 -0.6 605,778 + Dsui_0610 0.80 -0.2 605,786 - Dsui_0610 0.80 -1.2 605,796 + Dsui_0610 0.81 -0.6 605,916 + +0.3 605,987 + -0.2 606,036 + +0.7 606,041 + +0.0 606,193 - -3.3 606,198 - -1.2 606,199 - -1.9 606,256 + -1.9 606,301 + Dsui_0611 0.11 +0.4 606,510 + Dsui_0611 0.21 -0.6 606,532 - Dsui_0611 0.22 +1.4 606,590 - +0.4 606,597 - Dsui_0611 0.25 -0.6 606,637 + Dsui_0611 0.27 -1.2 606,671 - Dsui_0611 0.28 +0.0 606,790 - Dsui_0611 0.34 +0.4 606,869 - Dsui_0611 0.38 +0.4
Or see this region's nucleotide sequence