Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0566 and Dsui_0567 overlap by 4 nucleotides Dsui_0567 and Dsui_0568 are separated by 168 nucleotides Dsui_0568 and Dsui_0569 are separated by 81 nucleotides Dsui_0569 and Dsui_0570 are separated by 19 nucleotides
Dsui_0566: Dsui_0566 - putative molybdenum utilization protein ModD, at 565,678 to 566,568
_0566
Dsui_0567: Dsui_0567 - molybdenum-pterin binding domain protein, at 566,565 to 567,395
_0567
Dsui_0568: Dsui_0568 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 567,564 to 569,480
_0568
Dsui_0569: Dsui_0569 - hypothetical protein, at 569,562 to 570,041
_0569
Dsui_0570: Dsui_0570 - hypothetical protein, at 570,061 to 570,555
_0570
Position (kb) 567
568
569
570 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 566.792 kb on - strand, within Dsui_0567 at 566.851 kb on - strand at 566.913 kb on - strand, within Dsui_0567 at 566.987 kb on + strand at 567.157 kb on + strand at 567.275 kb on - strand at 567.360 kb on - strand at 567.360 kb on - strand at 567.360 kb on - strand at 567.360 kb on - strand at 567.390 kb on - strand at 567.440 kb on + strand at 567.453 kb on - strand at 567.695 kb on + strand at 567.840 kb on - strand, within Dsui_0568 at 567.880 kb on + strand, within Dsui_0568 at 567.948 kb on - strand at 567.979 kb on - strand, within Dsui_0568 at 568.225 kb on - strand, within Dsui_0568 at 568.313 kb on + strand, within Dsui_0568 at 568.313 kb on + strand at 568.321 kb on - strand, within Dsui_0568 at 568.359 kb on - strand, within Dsui_0568 at 568.433 kb on + strand at 568.439 kb on - strand, within Dsui_0568 at 568.567 kb on + strand, within Dsui_0568 at 568.695 kb on - strand, within Dsui_0568 at 569.020 kb on - strand at 569.110 kb on - strand, within Dsui_0568 at 569.138 kb on - strand, within Dsui_0568 at 569.183 kb on + strand, within Dsui_0568 at 569.191 kb on - strand, within Dsui_0568 at 569.271 kb on - strand at 569.366 kb on - strand at 569.449 kb on - strand at 569.449 kb on - strand at 569.514 kb on + strand at 569.514 kb on + strand at 569.517 kb on - strand at 569.734 kb on - strand, within Dsui_0569 at 569.783 kb on - strand, within Dsui_0569 at 569.827 kb on - strand, within Dsui_0569 at 569.858 kb on + strand at 569.980 kb on - strand, within Dsui_0569 at 569.998 kb on - strand at 570.201 kb on - strand, within Dsui_0570 at 570.250 kb on + strand at 570.393 kb on - strand, within Dsui_0570
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 566,792 - Dsui_0567 0.27 -1.6 566,851 - +0.4 566,913 - Dsui_0567 0.42 -0.6 566,987 + +0.4 567,157 + -1.2 567,275 - +0.4 567,360 - -1.2 567,360 - +0.4 567,360 - -0.6 567,360 - -2.9 567,390 - -1.2 567,440 + -0.6 567,453 - -1.2 567,695 + +0.4 567,840 - Dsui_0568 0.14 +1.2 567,880 + Dsui_0568 0.16 -1.2 567,948 - +0.4 567,979 - Dsui_0568 0.22 -2.2 568,225 - Dsui_0568 0.34 -3.0 568,313 + Dsui_0568 0.39 -1.9 568,313 + -1.2 568,321 - Dsui_0568 0.39 -1.2 568,359 - Dsui_0568 0.41 -2.6 568,433 + +0.4 568,439 - Dsui_0568 0.46 -2.7 568,567 + Dsui_0568 0.52 -1.4 568,695 - Dsui_0568 0.59 -1.4 569,020 - +0.4 569,110 - Dsui_0568 0.81 -2.4 569,138 - Dsui_0568 0.82 +0.4 569,183 + Dsui_0568 0.84 -3.0 569,191 - Dsui_0568 0.85 -2.9 569,271 - -1.1 569,366 - +1.4 569,449 - -1.9 569,449 - -0.5 569,514 + -1.9 569,514 + +0.4 569,517 - -1.3 569,734 - Dsui_0569 0.36 -1.6 569,783 - Dsui_0569 0.46 -0.9 569,827 - Dsui_0569 0.55 -0.0 569,858 + +0.4 569,980 - Dsui_0569 0.87 -0.6 569,998 - -0.6 570,201 - Dsui_0570 0.28 -0.6 570,250 + -0.6 570,393 - Dsui_0570 0.67 -0.6
Or see this region's nucleotide sequence