Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0558 and Dsui_0559 are separated by 180 nucleotides Dsui_0559 and Dsui_0560 are separated by 365 nucleotides Dsui_0560 and Dsui_0561 are separated by 213 nucleotides
Dsui_0558: Dsui_0558 - tetratricopeptide repeat protein, at 558,525 to 559,973
_0558
Dsui_0559: Dsui_0559 - alkylphosphonate utilization operon protein PhnA, at 560,154 to 560,495
_0559
Dsui_0560: Dsui_0560 - molybdenum-pterin binding domain protein, at 560,861 to 561,289
_0560
Dsui_0561: Dsui_0561 - ModE molybdate transport repressor domain/molybdenum-pterin binding domain protein, at 561,503 to 562,321
_0561
Position (kb) 560
561
562 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 559.901 kb on + strand at 559.903 kb on - strand at 559.970 kb on - strand at 560.050 kb on - strand at 560.052 kb on + strand at 560.073 kb on + strand at 560.115 kb on - strand at 560.152 kb on + strand at 560.160 kb on - strand at 560.160 kb on - strand at 560.183 kb on - strand at 560.206 kb on - strand, within Dsui_0559 at 560.250 kb on - strand, within Dsui_0559 at 560.287 kb on + strand, within Dsui_0559 at 560.287 kb on + strand, within Dsui_0559 at 560.295 kb on - strand, within Dsui_0559 at 560.372 kb on - strand, within Dsui_0559 at 560.403 kb on - strand, within Dsui_0559 at 560.486 kb on + strand at 560.494 kb on - strand at 560.494 kb on - strand at 560.499 kb on + strand at 560.499 kb on - strand at 560.615 kb on - strand at 560.656 kb on + strand at 560.656 kb on + strand at 560.773 kb on + strand at 560.773 kb on + strand at 560.773 kb on + strand at 560.789 kb on - strand at 560.832 kb on + strand at 560.867 kb on - strand at 560.873 kb on + strand at 560.881 kb on - strand at 560.881 kb on - strand at 560.897 kb on + strand at 560.905 kb on - strand, within Dsui_0560 at 560.926 kb on - strand, within Dsui_0560 at 560.998 kb on - strand, within Dsui_0560 at 561.042 kb on + strand, within Dsui_0560 at 561.042 kb on + strand, within Dsui_0560 at 561.050 kb on - strand, within Dsui_0560 at 561.050 kb on - strand, within Dsui_0560 at 561.102 kb on - strand, within Dsui_0560 at 561.108 kb on + strand, within Dsui_0560 at 561.108 kb on + strand, within Dsui_0560 at 561.116 kb on - strand, within Dsui_0560 at 561.119 kb on + strand, within Dsui_0560 at 561.139 kb on + strand, within Dsui_0560 at 561.147 kb on - strand, within Dsui_0560 at 561.154 kb on + strand, within Dsui_0560 at 561.164 kb on + strand, within Dsui_0560 at 561.172 kb on - strand, within Dsui_0560 at 561.195 kb on - strand, within Dsui_0560 at 561.198 kb on - strand, within Dsui_0560 at 561.218 kb on - strand, within Dsui_0560 at 561.222 kb on + strand, within Dsui_0560 at 561.222 kb on + strand, within Dsui_0560 at 561.230 kb on - strand, within Dsui_0560 at 561.230 kb on - strand, within Dsui_0560 at 561.231 kb on + strand, within Dsui_0560 at 561.238 kb on + strand, within Dsui_0560 at 561.240 kb on - strand, within Dsui_0560 at 561.240 kb on - strand, within Dsui_0560 at 561.245 kb on + strand, within Dsui_0560 at 561.246 kb on + strand, within Dsui_0560 at 561.246 kb on + strand, within Dsui_0560 at 561.246 kb on + strand, within Dsui_0560 at 561.246 kb on + strand, within Dsui_0560 at 561.246 kb on + strand, within Dsui_0560 at 561.253 kb on - strand at 561.253 kb on - strand at 561.254 kb on - strand at 561.254 kb on - strand at 561.254 kb on - strand at 561.254 kb on - strand at 561.254 kb on - strand at 561.254 kb on - strand at 561.261 kb on - strand at 561.266 kb on + strand at 561.266 kb on + strand at 561.266 kb on + strand at 561.267 kb on + strand at 561.268 kb on + strand at 561.268 kb on + strand at 561.268 kb on + strand at 561.268 kb on + strand at 561.268 kb on + strand at 561.268 kb on + strand at 561.268 kb on + strand at 561.274 kb on - strand at 561.274 kb on - strand at 561.274 kb on - strand at 561.274 kb on - strand at 561.274 kb on - strand at 561.274 kb on - strand at 561.274 kb on - strand at 561.274 kb on - strand at 561.276 kb on + strand at 561.276 kb on - strand at 561.276 kb on - strand at 561.276 kb on - strand at 561.276 kb on - strand at 561.276 kb on - strand at 561.276 kb on - strand at 561.276 kb on - strand at 561.276 kb on - strand at 561.276 kb on - strand at 561.276 kb on - strand at 561.276 kb on - strand at 561.281 kb on + strand at 561.281 kb on + strand at 561.281 kb on + strand at 561.284 kb on - strand at 561.287 kb on - strand at 561.288 kb on + strand at 561.288 kb on + strand at 561.289 kb on - strand at 561.289 kb on - strand at 561.290 kb on + strand at 561.290 kb on + strand at 561.290 kb on + strand at 561.290 kb on + strand at 561.290 kb on + strand at 561.290 kb on + strand at 561.298 kb on - strand at 561.298 kb on - strand at 561.300 kb on + strand at 561.300 kb on + strand at 561.308 kb on - strand at 561.323 kb on - strand at 561.362 kb on - strand at 561.362 kb on - strand at 561.382 kb on - strand at 561.382 kb on - strand at 561.438 kb on + strand at 561.496 kb on + strand at 561.496 kb on + strand at 561.497 kb on + strand at 561.497 kb on + strand at 561.497 kb on + strand at 561.497 kb on + strand at 561.497 kb on + strand at 561.497 kb on + strand at 561.498 kb on - strand at 561.504 kb on - strand at 561.504 kb on - strand at 561.505 kb on - strand at 561.505 kb on - strand at 561.505 kb on - strand at 561.505 kb on - strand at 561.507 kb on + strand at 561.507 kb on + strand at 561.507 kb on + strand at 561.517 kb on + strand at 561.529 kb on + strand at 561.529 kb on + strand at 561.529 kb on + strand at 561.534 kb on + strand at 561.537 kb on - strand at 561.542 kb on + strand at 561.561 kb on - strand at 561.597 kb on - strand, within Dsui_0561 at 561.597 kb on - strand, within Dsui_0561 at 561.627 kb on + strand, within Dsui_0561 at 561.635 kb on + strand, within Dsui_0561 at 561.635 kb on + strand, within Dsui_0561 at 561.642 kb on - strand, within Dsui_0561 at 561.810 kb on - strand, within Dsui_0561 at 561.812 kb on + strand, within Dsui_0561 at 561.840 kb on - strand, within Dsui_0561 at 561.960 kb on + strand, within Dsui_0561 at 562.031 kb on - strand, within Dsui_0561 at 562.042 kb on + strand, within Dsui_0561 at 562.056 kb on - strand, within Dsui_0561 at 562.069 kb on + strand, within Dsui_0561 at 562.078 kb on - strand, within Dsui_0561 at 562.083 kb on - strand, within Dsui_0561 at 562.091 kb on - strand, within Dsui_0561 at 562.185 kb on + strand, within Dsui_0561 at 562.185 kb on + strand, within Dsui_0561 at 562.185 kb on + strand, within Dsui_0561 at 562.185 kb on + strand, within Dsui_0561 at 562.185 kb on + strand, within Dsui_0561 at 562.187 kb on - strand, within Dsui_0561 at 562.278 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 559,901 + +0.4 559,903 - -0.6 559,970 - -1.6 560,050 - -1.6 560,052 + -2.9 560,073 + +0.4 560,115 - -0.4 560,152 + +0.4 560,160 - -0.9 560,160 - +0.4 560,183 - -0.3 560,206 - Dsui_0559 0.15 -0.8 560,250 - Dsui_0559 0.28 -0.2 560,287 + Dsui_0559 0.39 +0.4 560,287 + Dsui_0559 0.39 -2.6 560,295 - Dsui_0559 0.41 -0.0 560,372 - Dsui_0559 0.64 -0.4 560,403 - Dsui_0559 0.73 -0.5 560,486 + +0.4 560,494 - +0.5 560,494 - -0.1 560,499 + -0.6 560,499 - +0.2 560,615 - +0.4 560,656 + +0.4 560,656 + -0.6 560,773 + +0.0 560,773 + +0.4 560,773 + +0.8 560,789 - -0.6 560,832 + -0.6 560,867 - -0.6 560,873 + -0.6 560,881 - -0.8 560,881 - +0.6 560,897 + -1.9 560,905 - Dsui_0560 0.10 -0.2 560,926 - Dsui_0560 0.15 -0.1 560,998 - Dsui_0560 0.32 +0.4 561,042 + Dsui_0560 0.42 +0.4 561,042 + Dsui_0560 0.42 +0.4 561,050 - Dsui_0560 0.44 -0.5 561,050 - Dsui_0560 0.44 -0.4 561,102 - Dsui_0560 0.56 -0.2 561,108 + Dsui_0560 0.58 -0.6 561,108 + Dsui_0560 0.58 +0.4 561,116 - Dsui_0560 0.59 -0.2 561,119 + Dsui_0560 0.60 -1.2 561,139 + Dsui_0560 0.65 -1.2 561,147 - Dsui_0560 0.67 +0.0 561,154 + Dsui_0560 0.68 +0.4 561,164 + Dsui_0560 0.71 -1.6 561,172 - Dsui_0560 0.72 +0.1 561,195 - Dsui_0560 0.78 -0.2 561,198 - Dsui_0560 0.79 -0.2 561,218 - Dsui_0560 0.83 -0.2 561,222 + Dsui_0560 0.84 -1.2 561,222 + Dsui_0560 0.84 +0.4 561,230 - Dsui_0560 0.86 +1.1 561,230 - Dsui_0560 0.86 -0.1 561,231 + Dsui_0560 0.86 +0.4 561,238 + Dsui_0560 0.88 +0.4 561,240 - Dsui_0560 0.88 -0.2 561,240 - Dsui_0560 0.88 -0.3 561,245 + Dsui_0560 0.90 +0.4 561,246 + Dsui_0560 0.90 -0.6 561,246 + Dsui_0560 0.90 -1.2 561,246 + Dsui_0560 0.90 -0.6 561,246 + Dsui_0560 0.90 -1.2 561,246 + Dsui_0560 0.90 +0.4 561,253 - +0.2 561,253 - -0.3 561,254 - +0.1 561,254 - -0.1 561,254 - +0.3 561,254 - -0.2 561,254 - +1.0 561,254 - +0.3 561,261 - -0.1 561,266 + -0.6 561,266 + -1.9 561,266 + +0.4 561,267 + -1.6 561,268 + +0.4 561,268 + +0.4 561,268 + -1.9 561,268 + -0.6 561,268 + -0.6 561,268 + +0.4 561,268 + -1.2 561,274 - +0.5 561,274 - +0.0 561,274 - -0.5 561,274 - +0.1 561,274 - +0.4 561,274 - -0.2 561,274 - -0.1 561,274 - +0.3 561,276 + -1.9 561,276 - -0.5 561,276 - -1.7 561,276 - +0.3 561,276 - -0.3 561,276 - +0.4 561,276 - +0.2 561,276 - +0.7 561,276 - +0.3 561,276 - +0.4 561,276 - -0.3 561,276 - +1.1 561,281 + +0.4 561,281 + -2.6 561,281 + -1.2 561,284 - -2.8 561,287 - -0.2 561,288 + +0.4 561,288 + -0.6 561,289 - +0.4 561,289 - +0.4 561,290 + +0.4 561,290 + +0.3 561,290 + +1.4 561,290 + -0.6 561,290 + -0.2 561,290 + -0.6 561,298 - +0.4 561,298 - -2.6 561,300 + +0.4 561,300 + +0.4 561,308 - +0.4 561,323 - +0.4 561,362 - -0.8 561,362 - -0.7 561,382 - -0.1 561,382 - +0.4 561,438 + -1.6 561,496 + +0.4 561,496 + +0.4 561,497 + -0.6 561,497 + +0.4 561,497 + +0.4 561,497 + +0.4 561,497 + +0.4 561,497 + +0.4 561,498 - -2.8 561,504 - -1.2 561,504 - -1.9 561,505 - -0.6 561,505 - +0.4 561,505 - +0.4 561,505 - -2.2 561,507 + +0.1 561,507 + -2.2 561,507 + +2.0 561,517 + -0.3 561,529 + +0.0 561,529 + +0.0 561,529 + +0.3 561,534 + -0.8 561,537 - +0.4 561,542 + -0.1 561,561 - -0.6 561,597 - Dsui_0561 0.11 -1.2 561,597 - Dsui_0561 0.11 -0.6 561,627 + Dsui_0561 0.15 -0.4 561,635 + Dsui_0561 0.16 +0.4 561,635 + Dsui_0561 0.16 -0.3 561,642 - Dsui_0561 0.17 -1.9 561,810 - Dsui_0561 0.37 -2.2 561,812 + Dsui_0561 0.38 -0.4 561,840 - Dsui_0561 0.41 -0.6 561,960 + Dsui_0561 0.56 +0.4 562,031 - Dsui_0561 0.64 -3.2 562,042 + Dsui_0561 0.66 -0.4 562,056 - Dsui_0561 0.68 -0.6 562,069 + Dsui_0561 0.69 +0.1 562,078 - Dsui_0561 0.70 +0.4 562,083 - Dsui_0561 0.71 +0.4 562,091 - Dsui_0561 0.72 -1.2 562,185 + Dsui_0561 0.83 -0.2 562,185 + Dsui_0561 0.83 -0.6 562,185 + Dsui_0561 0.83 +0.6 562,185 + Dsui_0561 0.83 +0.3 562,185 + Dsui_0561 0.83 -0.2 562,187 - Dsui_0561 0.84 +0.4 562,278 - -2.2
Or see this region's nucleotide sequence