Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0552 and Dsui_0553 overlap by 8 nucleotides Dsui_0553 and Dsui_0554 are separated by 153 nucleotides Dsui_0554 and Dsui_0555 are separated by 8 nucleotides Dsui_0555 and Dsui_0556 are separated by 21 nucleotides Dsui_0556 and Dsui_0557 are separated by 26 nucleotides
Dsui_0552: Dsui_0552 - nitrogen fixation protein NifX, at 556,153 to 556,581
_0552
Dsui_0553: Dsui_0553 - putative nitrogen fixation protein, at 556,574 to 557,044
_0553
Dsui_0554: Dsui_0554 - uncharacterized conserved small protein containing a coiled-coil domain, at 557,198 to 557,395
_0554
Dsui_0555: Dsui_0555 - hypothetical protein, at 557,404 to 557,784
_0555
Dsui_0556: Dsui_0556 - ferredoxin III, nif-specific, at 557,806 to 558,105
_0556
Dsui_0557: Dsui_0557 - NifQ, at 558,132 to 558,557
_0557
Position (kb) 557
558 Strain fitness (log2 ratio) -2
-1
0
1 at 556.209 kb on - strand, within Dsui_0552 at 556.259 kb on + strand, within Dsui_0552 at 556.272 kb on - strand, within Dsui_0552 at 556.351 kb on - strand, within Dsui_0552 at 556.355 kb on + strand, within Dsui_0552 at 556.478 kb on - strand at 556.485 kb on - strand at 556.534 kb on - strand, within Dsui_0552 at 556.597 kb on - strand at 556.717 kb on + strand, within Dsui_0553 at 556.784 kb on + strand, within Dsui_0553 at 556.839 kb on - strand, within Dsui_0553 at 556.876 kb on - strand, within Dsui_0553 at 556.931 kb on + strand at 557.008 kb on - strand at 557.055 kb on - strand at 557.056 kb on - strand at 557.056 kb on - strand at 557.056 kb on - strand at 557.073 kb on + strand at 557.168 kb on - strand at 557.254 kb on - strand, within Dsui_0554 at 557.259 kb on - strand, within Dsui_0554 at 557.266 kb on - strand, within Dsui_0554 at 557.335 kb on - strand, within Dsui_0554 at 557.534 kb on - strand, within Dsui_0555 at 557.641 kb on + strand, within Dsui_0555 at 557.753 kb on + strand at 557.770 kb on + strand at 557.829 kb on + strand at 557.848 kb on + strand, within Dsui_0556 at 558.041 kb on + strand, within Dsui_0556 at 558.083 kb on + strand at 558.247 kb on - strand, within Dsui_0557 at 558.323 kb on - strand, within Dsui_0557 at 558.393 kb on + strand, within Dsui_0557
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 556,209 - Dsui_0552 0.13 -0.6 556,259 + Dsui_0552 0.25 -1.2 556,272 - Dsui_0552 0.28 +0.4 556,351 - Dsui_0552 0.46 +0.4 556,355 + Dsui_0552 0.47 +0.4 556,478 - +0.4 556,485 - +0.4 556,534 - Dsui_0552 0.89 -2.4 556,597 - -2.4 556,717 + Dsui_0553 0.30 -1.2 556,784 + Dsui_0553 0.45 -1.2 556,839 - Dsui_0553 0.56 -1.2 556,876 - Dsui_0553 0.64 -1.6 556,931 + +0.4 557,008 - +0.4 557,055 - +0.4 557,056 - -0.6 557,056 - +0.4 557,056 - +0.4 557,073 + -1.2 557,168 - -0.6 557,254 - Dsui_0554 0.28 +0.4 557,259 - Dsui_0554 0.31 +0.4 557,266 - Dsui_0554 0.34 -1.6 557,335 - Dsui_0554 0.69 -1.2 557,534 - Dsui_0555 0.34 -1.6 557,641 + Dsui_0555 0.62 -0.6 557,753 + -0.6 557,770 + +0.4 557,829 + -0.6 557,848 + Dsui_0556 0.14 -0.6 558,041 + Dsui_0556 0.78 +0.4 558,083 + -0.6 558,247 - Dsui_0557 0.27 -1.2 558,323 - Dsui_0557 0.45 +0.4 558,393 + Dsui_0557 0.61 -1.6
Or see this region's nucleotide sequence