Experiment: ALP with Fusidic 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0522 and Dsui_0523 overlap by 1 nucleotides Dsui_0523 and Dsui_0524 are separated by 244 nucleotides
Dsui_0522: Dsui_0522 - SSS sodium solute transporter, at 529,167 to 530,840
_0522
Dsui_0523: Dsui_0523 - putative membrane protein, at 530,840 to 531,160
_0523
Dsui_0524: Dsui_0524 - putative permease, at 531,405 to 532,208
_0524
Position (kb) 530
531
532 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 529.855 kb on + strand, within Dsui_0522 at 529.868 kb on - strand, within Dsui_0522 at 529.873 kb on - strand, within Dsui_0522 at 530.025 kb on + strand, within Dsui_0522 at 530.046 kb on - strand, within Dsui_0522 at 530.046 kb on - strand, within Dsui_0522 at 530.071 kb on + strand, within Dsui_0522 at 530.079 kb on - strand, within Dsui_0522 at 530.215 kb on - strand, within Dsui_0522 at 530.240 kb on - strand, within Dsui_0522 at 530.273 kb on - strand, within Dsui_0522 at 530.354 kb on + strand, within Dsui_0522 at 530.385 kb on + strand, within Dsui_0522 at 530.402 kb on + strand, within Dsui_0522 at 530.441 kb on - strand, within Dsui_0522 at 530.537 kb on - strand, within Dsui_0522 at 530.543 kb on + strand, within Dsui_0522 at 530.550 kb on + strand, within Dsui_0522 at 530.635 kb on + strand, within Dsui_0522 at 530.635 kb on + strand, within Dsui_0522 at 530.685 kb on + strand at 530.813 kb on + strand at 530.862 kb on + strand at 530.944 kb on + strand, within Dsui_0523 at 530.991 kb on + strand, within Dsui_0523 at 531.077 kb on + strand, within Dsui_0523 at 531.155 kb on + strand at 531.163 kb on - strand at 531.165 kb on - strand at 531.168 kb on - strand at 531.210 kb on + strand at 531.217 kb on + strand at 531.217 kb on + strand at 531.222 kb on + strand at 531.224 kb on - strand at 531.225 kb on - strand at 531.230 kb on - strand at 531.260 kb on + strand at 531.329 kb on + strand at 531.329 kb on + strand at 531.492 kb on + strand, within Dsui_0524 at 531.546 kb on - strand, within Dsui_0524 at 531.613 kb on - strand, within Dsui_0524 at 531.626 kb on - strand, within Dsui_0524 at 531.655 kb on - strand, within Dsui_0524 at 531.703 kb on + strand, within Dsui_0524 at 531.704 kb on + strand, within Dsui_0524 at 531.842 kb on + strand, within Dsui_0524 at 531.845 kb on - strand, within Dsui_0524 at 531.925 kb on + strand, within Dsui_0524 at 531.928 kb on - strand, within Dsui_0524 at 531.933 kb on - strand, within Dsui_0524 at 531.952 kb on - strand, within Dsui_0524 at 531.986 kb on + strand, within Dsui_0524 at 532.037 kb on - strand, within Dsui_0524 at 532.077 kb on - strand, within Dsui_0524
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml remove 529,855 + Dsui_0522 0.41 -1.2 529,868 - Dsui_0522 0.42 -0.6 529,873 - Dsui_0522 0.42 +0.4 530,025 + Dsui_0522 0.51 +1.4 530,046 - Dsui_0522 0.53 -1.6 530,046 - Dsui_0522 0.53 -1.6 530,071 + Dsui_0522 0.54 +0.8 530,079 - Dsui_0522 0.54 -1.2 530,215 - Dsui_0522 0.63 -0.2 530,240 - Dsui_0522 0.64 -1.2 530,273 - Dsui_0522 0.66 -1.6 530,354 + Dsui_0522 0.71 -0.6 530,385 + Dsui_0522 0.73 -1.9 530,402 + Dsui_0522 0.74 -0.6 530,441 - Dsui_0522 0.76 -2.5 530,537 - Dsui_0522 0.82 -0.3 530,543 + Dsui_0522 0.82 +0.4 530,550 + Dsui_0522 0.83 -1.2 530,635 + Dsui_0522 0.88 +0.4 530,635 + Dsui_0522 0.88 -0.6 530,685 + -1.6 530,813 + -1.2 530,862 + -1.6 530,944 + Dsui_0523 0.32 -2.6 530,991 + Dsui_0523 0.47 +0.4 531,077 + Dsui_0523 0.74 -0.6 531,155 + -0.6 531,163 - -0.6 531,165 - -1.9 531,168 - -1.6 531,210 + +0.4 531,217 + -0.6 531,217 + +0.4 531,222 + -1.2 531,224 - +0.4 531,225 - +0.4 531,230 - -1.6 531,260 + +0.4 531,329 + -1.6 531,329 + -0.6 531,492 + Dsui_0524 0.11 -0.1 531,546 - Dsui_0524 0.18 +0.1 531,613 - Dsui_0524 0.26 -0.7 531,626 - Dsui_0524 0.27 +0.0 531,655 - Dsui_0524 0.31 +0.0 531,703 + Dsui_0524 0.37 -3.5 531,704 + Dsui_0524 0.37 -1.9 531,842 + Dsui_0524 0.54 -0.6 531,845 - Dsui_0524 0.55 -0.1 531,925 + Dsui_0524 0.65 -0.6 531,928 - Dsui_0524 0.65 -0.6 531,933 - Dsui_0524 0.66 +0.4 531,952 - Dsui_0524 0.68 -0.1 531,986 + Dsui_0524 0.72 -0.6 532,037 - Dsui_0524 0.79 -0.2 532,077 - Dsui_0524 0.84 -0.2
Or see this region's nucleotide sequence