Strain Fitness in Dechlorosoma suillum PS around Dsui_0491

Experiment: ALP with Fusidic 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0490 and Dsui_0491 overlap by 4 nucleotidesDsui_0491 and Dsui_0492 are separated by 144 nucleotidesDsui_0492 and Dsui_0493 are separated by 5 nucleotides Dsui_0490: Dsui_0490 - putative ATPase, at 492,341 to 493,861 _0490 Dsui_0491: Dsui_0491 - putative oxygen-independent coproporphyrinogen III oxidase, at 493,858 to 495,096 _0491 Dsui_0492: Dsui_0492 - non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family, at 495,241 to 495,831 _0492 Dsui_0493: Dsui_0493 - hypothetical protein, at 495,837 to 496,745 _0493 Position (kb) 493 494 495 496Strain fitness (log2 ratio) -3 -2 -1 0 1at 492.907 kb on - strand, within Dsui_0490at 492.927 kb on - strand, within Dsui_0490at 492.967 kb on + strand, within Dsui_0490at 492.977 kb on + strand, within Dsui_0490at 493.086 kb on + strand, within Dsui_0490at 493.238 kb on + strand, within Dsui_0490at 493.304 kb on - strand, within Dsui_0490at 493.335 kb on - strand, within Dsui_0490at 493.357 kb on - strand, within Dsui_0490at 493.358 kb on - strand, within Dsui_0490at 493.598 kb on - strand, within Dsui_0490at 493.627 kb on + strand, within Dsui_0490at 493.635 kb on - strand, within Dsui_0490at 493.650 kb on - strand, within Dsui_0490at 493.829 kb on + strandat 493.846 kb on - strandat 493.942 kb on + strandat 494.018 kb on - strand, within Dsui_0491at 494.085 kb on + strand, within Dsui_0491at 494.169 kb on - strand, within Dsui_0491at 494.208 kb on - strand, within Dsui_0491at 494.426 kb on - strand, within Dsui_0491at 494.495 kb on + strandat 494.500 kb on + strand, within Dsui_0491at 494.573 kb on + strand, within Dsui_0491at 494.593 kb on - strand, within Dsui_0491at 494.609 kb on + strand, within Dsui_0491at 494.609 kb on + strand, within Dsui_0491at 494.610 kb on - strand, within Dsui_0491at 494.715 kb on + strand, within Dsui_0491at 494.755 kb on + strand, within Dsui_0491at 494.800 kb on - strand, within Dsui_0491at 494.810 kb on - strand, within Dsui_0491at 494.810 kb on - strand, within Dsui_0491at 494.810 kb on - strand, within Dsui_0491at 494.855 kb on - strand, within Dsui_0491at 494.923 kb on + strand, within Dsui_0491at 494.980 kb on + strandat 495.155 kb on + strandat 495.202 kb on - strandat 495.238 kb on + strandat 495.487 kb on - strand, within Dsui_0492at 495.598 kb on + strand, within Dsui_0492at 495.765 kb on - strand, within Dsui_0492at 495.772 kb on - strand, within Dsui_0492at 495.772 kb on - strand, within Dsui_0492at 495.775 kb on + strandat 495.808 kb on - strandat 495.828 kb on + strandat 495.833 kb on + strandat 495.833 kb on + strandat 495.833 kb on + strandat 495.841 kb on - strandat 495.841 kb on - strandat 496.081 kb on - strand, within Dsui_0493

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Fusidic 0.02 mg/ml
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492,907 - Dsui_0490 0.37 -0.6
492,927 - Dsui_0490 0.39 +0.4
492,967 + Dsui_0490 0.41 -1.5
492,977 + Dsui_0490 0.42 +0.2
493,086 + Dsui_0490 0.49 -0.5
493,238 + Dsui_0490 0.59 +0.4
493,304 - Dsui_0490 0.63 -0.6
493,335 - Dsui_0490 0.65 +0.4
493,357 - Dsui_0490 0.67 -1.2
493,358 - Dsui_0490 0.67 -2.3
493,598 - Dsui_0490 0.83 +0.1
493,627 + Dsui_0490 0.85 +0.4
493,635 - Dsui_0490 0.85 +1.7
493,650 - Dsui_0490 0.86 -1.2
493,829 + -1.1
493,846 - -1.0
493,942 + -1.5
494,018 - Dsui_0491 0.13 -1.0
494,085 + Dsui_0491 0.18 -2.8
494,169 - Dsui_0491 0.25 -2.0
494,208 - Dsui_0491 0.28 -1.3
494,426 - Dsui_0491 0.46 -1.7
494,495 + +0.4
494,500 + Dsui_0491 0.52 -1.6
494,573 + Dsui_0491 0.58 +0.4
494,593 - Dsui_0491 0.59 -1.0
494,609 + Dsui_0491 0.61 -1.2
494,609 + Dsui_0491 0.61 -2.2
494,610 - Dsui_0491 0.61 -1.2
494,715 + Dsui_0491 0.69 -0.6
494,755 + Dsui_0491 0.72 -1.2
494,800 - Dsui_0491 0.76 -0.2
494,810 - Dsui_0491 0.77 -1.2
494,810 - Dsui_0491 0.77 -1.1
494,810 - Dsui_0491 0.77 -1.7
494,855 - Dsui_0491 0.80 -0.4
494,923 + Dsui_0491 0.86 +0.4
494,980 + -1.8
495,155 + +0.4
495,202 - -0.2
495,238 + -2.4
495,487 - Dsui_0492 0.42 -0.4
495,598 + Dsui_0492 0.60 -0.6
495,765 - Dsui_0492 0.89 -0.1
495,772 - Dsui_0492 0.90 +0.4
495,772 - Dsui_0492 0.90 -0.0
495,775 + +0.4
495,808 - +0.6
495,828 + -1.2
495,833 + -0.6
495,833 + -0.6
495,833 + -1.6
495,841 - -0.0
495,841 - -0.3
496,081 - Dsui_0493 0.27 +0.3

Or see this region's nucleotide sequence